PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0119s0025.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 620aa    MW: 67438.2 Da    PI: 8.0671
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0119s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.19e-912486192374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                          ++ L+e+A a+++g+ e a ++++rl + ++p+g+p qRla y+  AL+++l++ +++       ++++e +sse+  +++l+++ s ++
  Kalax.0119s0025.1.p 248 KKSLIEAAAAIADGKSESAAEIVTRLTQSSNPRGTPEQRLAYYMSLALKSKLTS-GEGQ------KSANEIRSSEHYESVQLLYQHSSCF 330
                          578**************************************************9.2222......22233347899999*********** PP

                 GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg....skeeleetgerLakfAeelgvpf 176
                          k+++l+aN aI e ++  + +H++Dfd++ G+Q+ +Llq L+ R++g+p s+RiT+v+  e+g     ++     +e+L+++ e++gvp+
  Kalax.0119s0025.1.p 331 KLGFLAANLAIIEGTADVKSLHVVDFDMGDGAQYHNLLQLLSLRKSGKPtSVRITTVDVGENGggggLERWSVLAKEKLSQLSERVGVPL 420
                          *********************************************77776*********999966644444445799************* PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          e ++ ++ r+ d++ ++L  +p+E++aVnl+++l +l+desvs+e++rde+L+ vk+l++++v+vve+e+++n++++ +r++e++++y a
  Kalax.0119s0025.1.p 421 ELRT-LHLRVGDVSRKSLCSNPDEVVAVNLAYSLSKLPDESVSTENKRDELLRRVKGLEARIVTVVEEEMNCNTAPLQTRVAECCSFYGA 509
                          ****.5999********************************************************************************* PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.... 352
                          l++s++++    + eri vE+  lgr+ vn vaceg +r+er+e l+kWr+r+++aGF+  p+s++++++ ++ +++ +  g rv     
  Kalax.0119s0025.1.p 510 LLESMDSG--GMEAERIRVEEG-LGRRMVNTVACEGGDRVERCEVLGKWRARMGMAGFELKPVSQNVVDSLSSRINNNS-GGTRVGcplf 595
                          *****888..5689********.****************************************************9999.5555543344 PP

                 GRAS 353 ..eesgslvlgWkdrpLvsvSaWr 374
                            e +g +++gW++r L+++S Wr
  Kalax.0119s0025.1.p 596 vkEANGGVCFGWMGRILTVTSTWR 619
                          4388*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.478221594IPR005202Transcription factor GRAS
PfamPF035143.1E-88248619IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MSSGGLPDFF SAAASSSSAG RPVNASSSSS VVIQQQQQPV MYHRPQFLPD HSQSGLGKRT  60
LAEFQNQRQQ FQHQNPLLLL RQQQQQQQGV GAFPMRSVKP RIYQNPSPIS PLSPIDLLPE  120
MGAAFMGRRQ NSIGFGRGSV VPTPTTNLSH HHNRVFVAGN SKEEVTETEK KMMNRLHELE  180
RQLLGDDNDD ARDSVSVITG NEWSDTIQNL IVTNQKPPPP QQVNTSSPTS SSSSCSSVVA  240
SPLPICAKKS LIEAAAAIAD GKSESAAEIV TRLTQSSNPR GTPEQRLAYY MSLALKSKLT  300
SGEGQKSANE IRSSEHYESV QLLYQHSSCF KLGFLAANLA IIEGTADVKS LHVVDFDMGD  360
GAQYHNLLQL LSLRKSGKPT SVRITTVDVG ENGGGGGLER WSVLAKEKLS QLSERVGVPL  420
ELRTLHLRVG DVSRKSLCSN PDEVVAVNLA YSLSKLPDES VSTENKRDEL LRRVKGLEAR  480
IVTVVEEEMN CNTAPLQTRV AECCSFYGAL LESMDSGGME AERIRVEEGL GRRMVNTVAC  540
EGGDRVERCE VLGKWRARMG MAGFELKPVS QNVVDSLSSR INNNSGGTRV GCPLFVKEAN  600
GGVCFGWMGR ILTVTSTWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-362496196375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513664.11e-176scarecrow-like protein 8
TrEMBLB9RIU51e-174B9RIU5_RICCO; DELLA protein GAI, putative
STRINGXP_002513664.11e-175(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-122SCARECROW-like 8