PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0118s0081.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 487aa    MW: 52648.1 Da    PI: 9.7887
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0118s0081.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.7e-32201258159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ++DgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  +++++ei+Y+g+Hnhe
  Kalax.0118s0081.2.p 201 VEDGYNWRKYGQKQVKGSEYPRSYYKCTHFHCPVKKKVERSP-QGQIIEIIYKGQHNHE 258
                          58****************************************.9**************8 PP
2WRKY105.62.7e-33377435159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYGqK+vkg+ +prsYY+Ct++gC+v+k+ver++ dpk+v++tYeg+Hnh+
  Kalax.0118s0081.2.p 377 LDDGFRWRKYGQKVVKGNSHPRSYYKCTTPGCNVRKHVERASADPKAVITTYEGKHNHD 435
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.056196260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-28198259IPR003657WRKY domain
SuperFamilySSF1182902.62E-25199259IPR003657WRKY domain
SMARTSM007741.7E-34201259IPR003657WRKY domain
PfamPF031064.1E-25202258IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-36363436IPR003657WRKY domain
SuperFamilySSF1182901.05E-28369436IPR003657WRKY domain
PROSITE profilePS5081135.485372437IPR003657WRKY domain
SMARTSM007747.8E-40377436IPR003657WRKY domain
PfamPF031066.2E-26378435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MAKNQLSSAS AVSSTHHHPP RPATIALPPR TAAENLFASG FAGFSPGPMT LASSLFPADA  60
ADPRSFSQLL AGAMASPLPD KSDSKYKQNR PLNLEVSPSP IFMVPPGFSP SGLLNSPGIF  120
SPAQSPFGMS HQQALAQVTA QAALAQSNMQ LQANQTPFAN PPESYKPPST TEPKIASIAP  180
SELALSVPKS QPALAAPDKP VEDGYNWRKY GQKQVKGSEY PRSYYKCTHF HCPVKKKVER  240
SPQGQIIEII YKGQHNHEQT PPKKPAKDGN APIENVGAQA TPDVHQPELD RAEAPKRPME  300
TALEQIVNGK DQKFLQEASI DSRPLTTDET RGKADNDNGP VLKKRNTGSP AAEPTLPQKT  360
VVEPKIVVQT RSEVDLLDDG FRWRKYGQKV VKGNSHPRSY YKCTTPGCNV RKHVERASAD  420
PKAVITTYEG KHNHDTQEGR SNSRGPPHPK SQTVAAERHT VANEIEPTKN GQTGVAAPQL  480
QEKVNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-38201435875Probable WRKY transcription factor 4
2lex_A1e-38201435875Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010661104.11e-158PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-129WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLF6H5W31e-156F6H5W3_VITVI; Uncharacterized protein
STRINGVIT_14s0108g01280.t011e-157(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-121WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]