PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0118s0081.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 487aa MW: 52648.1 Da PI: 9.7887 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.7e-32 | 201 | 258 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++DgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers +++++ei+Y+g+Hnhe Kalax.0118s0081.1.p 201 VEDGYNWRKYGQKQVKGSEYPRSYYKCTHFHCPVKKKVERSP-QGQIIEIIYKGQHNHE 258 58****************************************.9**************8 PP | |||||||
2 | WRKY | 105.6 | 2.7e-33 | 377 | 435 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vkg+ +prsYY+Ct++gC+v+k+ver++ dpk+v++tYeg+Hnh+ Kalax.0118s0081.1.p 377 LDDGFRWRKYGQKVVKGNSHPRSYYKCTTPGCNVRKHVERASADPKAVITTYEGKHNHD 435 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.056 | 196 | 260 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.5E-28 | 198 | 259 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-25 | 199 | 259 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-34 | 201 | 259 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-25 | 202 | 258 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.8E-36 | 363 | 436 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-28 | 369 | 436 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 35.485 | 372 | 437 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-40 | 377 | 436 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.2E-26 | 378 | 435 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MAKNQLSSAS AVSSTHHHPP RPATIALPPR TAAENLFASG FAGFSPGPMT LASSLFPADA 60 ADPRSFSQLL AGAMASPLPD KSDSKYKQNR PLNLEVSPSP IFMVPPGFSP SGLLNSPGIF 120 SPAQSPFGMS HQQALAQVTA QAALAQSNMQ LQANQTPFAN PPESYKPPST TEPKIASIAP 180 SELALSVPKS QPALAAPDKP VEDGYNWRKY GQKQVKGSEY PRSYYKCTHF HCPVKKKVER 240 SPQGQIIEII YKGQHNHEQT PPKKPAKDGN APIENVGAQA TPDVHQPELD RAEAPKRPME 300 TALEQIVNGK DQKFLQEASI DSRPLTTDET RGKADNDNGP VLKKRNTGSP AAEPTLPQKT 360 VVEPKIVVQT RSEVDLLDDG FRWRKYGQKV VKGNSHPRSY YKCTTPGCNV RKHVERASAD 420 PKAVITTYEG KHNHDTQEGR SNSRGPPHPK SQTVAAERHT VANEIEPTKN GQTGVAAPQL 480 QEKVNA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-38 | 201 | 435 | 8 | 75 | Probable WRKY transcription factor 4 |
2lex_A | 1e-38 | 201 | 435 | 8 | 75 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010661104.1 | 1e-158 | PREDICTED: probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-129 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | F6H5W3 | 1e-156 | F6H5W3_VITVI; Uncharacterized protein | ||||
STRING | VIT_14s0108g01280.t01 | 1e-157 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-121 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0118s0081.1.p |
Publications ? help Back to Top | |||
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