PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0118s0073.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ZF-HD | ||||||||
Protein Properties | Length: 341aa MW: 36768.1 Da PI: 9.0376 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 106.2 | 1.9e-33 | 56 | 112 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 YkeCl+NhAaslGgha+DGCgEfmps+ ++ + +++lkCaACgCHRnFHRre+e+ Kalax.0118s0073.1.p 56 PAYKECLRNHAASLGGHALDGCGEFMPSPATNpSLPTSLKCAACGCHRNFHRREPED 112 57***************************999999*******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 4.1E-28 | 57 | 110 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 9.5E-30 | 58 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-22 | 58 | 112 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.874 | 58 | 109 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.66E-19 | 195 | 267 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-29 | 199 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.0E-26 | 206 | 262 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MDIIAAATDL SPARNESSKS PDPDPKRMIH SKPLSFTNGV MKRHRHLISP PSAAAPAYKE 60 CLRNHAASLG GHALDGCGEF MPSPATNPSL PTSLKCAACG CHRNFHRREP EDSPPALQLL 120 PPPLISTTAS QVVEYQPHHR VQPQPLPLPR ASSPNPPSPP PISSSYYPSS APRMLLALST 180 GVPPPENSQQ AAPTGNPVGS GSGGGRKRFR TKFSNSQKEK MYEFAERVGW KMQKRDEELV 240 NEFCNEVGVG RGVFKVWMHN NKSTLGKQSS SADAGNSNNE FLQNGIHHPK DVNNGELNTH 300 ILLGHSNLNG LDGDDMIHHH RHHHSEGRGG HVTTNGSSSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-20 | 207 | 264 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q9LXG0 | 7e-68 | ZHD8_ARATH; Zinc-finger homeodomain protein 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15210.1 | 7e-67 | homeobox protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0118s0073.1.p |
Publications ? help Back to Top | |||
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