PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0118s0041.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 370aa MW: 41014.8 Da PI: 6.6408 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.8 | 3.3e-15 | 56 | 103 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+++ + G g+W+ +ar g+ R++k+c++rw +yl Kalax.0118s0041.1.p 56 KGLWSPEEDDKLINYMLRNGQGCWSDVARSAGLQRCGKSCRLRWINYL 103 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.1e-17 | 109 | 152 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+v+++ +lG++ W+ Ia++++ gRt++++k++w++ Kalax.0118s0041.1.p 109 RGAFSPQEEELIVQLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNS 152 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 48 | 106 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.431 | 51 | 103 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.63E-28 | 54 | 150 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-11 | 55 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-14 | 56 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.71E-9 | 59 | 103 | No hit | No description |
PROSITE profile | PS51294 | 26.003 | 104 | 158 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-26 | 107 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-16 | 108 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-15 | 109 | 152 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.00E-11 | 111 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MIFGIHALIP IIRSNSSAAM RKPAADSPFT PPPSSSSSPP PSSSSSMKSG NGKLRKGLWS 60 PEEDDKLINY MLRNGQGCWS DVARSAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEELI 120 VQLHSLLGNR WSQIAARLPG RTDNEIKNFW NSTIKKRLKN ATSHNNMPPS SSDDDHQFSN 180 LGSSTGFMCM QRNHQHHLIH QSSNNTMFMN TAATGSYVDH SSSSGSSSSP SMALNHINSN 240 PNSLLMSCDM IFDDQSLVDI YDFGEGLVEL YVPPLDTINI DSTNTNMMSS FNNNDNILVE 300 GFKQVDQRHI MEAAARPNCR YTCGSSGVQE KQLSCEFGET NIRLGEWDLE ELMRSSSEIA 360 YSLPHLDLQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 54 | 158 | 5 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021278278.1 | 2e-80 | transcription factor MYB46 | ||||
TrEMBL | A0A151UEN0 | 8e-78 | A0A151UEN0_CAJCA; Transcription factor MYB46 | ||||
STRING | evm.model.supercontig_84.59 | 5e-78 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 2e-67 | myb domain protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0118s0041.1.p |