PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0118s0029.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

YABBY

Protein Properties

Length: 198aa MW: 21590.3 Da PI: 8.4996

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0118s0029.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	225.6	1.3e-69	4	171	6	169
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas.t 94 se+vCyv+CnfC+t+lavsvP ts++++vtvrCGhC++lls n+ + + ++ +++ + l ++ +n++ +++s+s + Kalax.0118s0029.1.p 4 GSERVCYVHCNFCDTVLAVSVPCTSMLNIVTVRCGHCANLLSANMGALLEPCSIQDLPQKQQQTGAEGALVTNATNVNYSSGSSSSSSpS 93 589***************************************9999887777775444444443334444444444433333333212 PP YABBY 95 svssekl...senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 + +++kl e+++ + p+ p +rP ekrqrvPsaynrfikeeiqrika+nP+ishreafsaaaknWahfP+ihfg Kalax.0118s0029.1.p 94 KCNTNKLsgsCESSESDQPHRLPPVRPMEKRQRVPSAYNRFIKEEIQRIKAGNPEISHREAFSAAAKNWAHFPHIHFG 171 3333444555455566667767779**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.6E-70	5	172	IPR006780	YABBY protein
SuperFamily	SSF47095	2.75E-7	118	166	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.1E-5	125	181	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MEVGSERVCY VHCNFCDTVL AVSVPCTSML NIVTVRCGHC ANLLSANMGA LLEPCSIQDL 60 PQKQQQTGAE GALVTNATNV NYSSGSSSSS SPSKCNTNKL SGSCESSESD QPHRLPPVRP 120 MEKRQRVPSA YNRFIKEEIQ RIKAGNPEIS HREAFSAAAK NWAHFPHIHF GMKKAKFVDQ 180 DQLASRDRSG QKSFGFN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027082540.1	3e-75	putative axial regulator YABBY 2 isoform X2
Swissprot	Q9XFB0	8e-64	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A061GUT1	3e-71	A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1
STRING	EOY33226	5e-72	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-64	YABBY family protein

Link Out ? help Back to Top
Phytozome	Kalax.0118s0029.1.p

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]