PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0118s0011.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 450aa    MW: 49537.5 Da    PI: 4.7161
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0118s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-173178148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+ Ed +l d+v+++G g+W+++ +  g++R++k+c++rw ++l
  Kalax.0118s0011.1.p 31 KGQWTPAEDAILRDYVEKHGEGNWNAVQKFSGLTRCGKSCRLRWANHL 78
                         799*****************************************9986 PP
2Myb_DNA-binding49.97.6e-1684127146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++T+eE +l ++++++lG++ W++ a++++ gRt++++k++w++
  Kalax.0118s0011.1.p  84 RGAFTPEEVQLVIKLHAKLGNK-WAKMAAELP-GRTDNEIKNFWNT 127
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4722678IPR017930Myb domain
SMARTSM007173.8E-143080IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-2930125IPR009057Homeodomain-like
PfamPF002496.9E-163178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-233285IPR009057Homeodomain-like
CDDcd001676.12E-123478No hitNo description
PROSITE profilePS5129424.79279133IPR017930Myb domain
SMARTSM007179.6E-1683131IPR001005SANT/Myb domain
PfamPF002497.7E-1584127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2486131IPR009057Homeodomain-like
CDDcd001677.74E-1286127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MEWNVADDML ESPSGEDLAN GEGKLSGILT KGQWTPAEDA ILRDYVEKHG EGNWNAVQKF  60
SGLTRCGKSC RLRWANHLKP NLKRGAFTPE EVQLVIKLHA KLGNKWAKMA AELPGRTDNE  120
IKNFWNTRIK RHQRSGLPIY PPEVCLKLAE ESQQSPHSAT FSNDLPSSHH FMEPSDFMIP  180
EFKIERPLNP SLFLDIPTSK EPPQGLGLVN TPNGLCDTAS RSLFENQIIH AEQPHHLPEL  240
YSSNSPLLCI PLGSHALPNG NLPTSAPGFG SVKLELPSLQ SSESDFIFWG APASPRPSFT  300
TKDSVAPSPQ VGPNLLQPAS DTDGLLESVV CPPNRLKTSN LDDLSLDPEW WEVLCDQPVT  360
PMGPSANGNS TDELLSVDVI LGNEGKISDA DPKQHLTSSN LNEIRDSCEW DPWRPDTWFN  420
AALLSPDTEH AREYQRLQET ISAICGDDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-25281311103C-Myb DNA-Binding Domain
1msf_C3e-25281311103C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021677407.11e-88transcription factor GAMYB-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.11e-69myb domain protein 33