PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0117s0024.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ZF-HD
Protein Properties Length: 345aa    MW: 37372.7 Da    PI: 9.0408
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0117s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.22e-3356112459
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                            YkeCl+NhAaslGgha+DGCgEfmps+ ++ + +++lkCaACgCHRnFHRre+e+
  Kalax.0117s0024.1.p  56 PAYKECLRNHAASLGGHALDGCGEFMPSPATNpSLPTSLKCAACGCHRNFHRREPED 112
                          57***************************999999*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.2E-2857110IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.87458109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.6E-3058109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2258112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.17E-19195267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-29199267IPR009057Homeodomain-like
TIGRFAMsTIGR015652.0E-26206262IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDIIAAATDL SPARNESSKS PDPDPKRMIH SKPLSFTNGV MKRHRHLISP PSAAAPAYKE  60
CLRNHAASLG GHALDGCGEF MPSPATNPSL PTSLKCAACG CHRNFHRREP EDSPPALQLL  120
PPPLISTTAS QVVEYQPHHR HQPQPLPLPR ASSPNPPSPP PISSSYYPSS APRMLLALST  180
GLPPPENSQQ AAPTGNPVGS GSGGGRKRFR TKFSNSQKEK MYEFAERVGW KMQKRDEELV  240
NEFCNEVGVG RGVFKVWMHN NKSTLGKRSS SADAGNSNNE FLQNGIHHHK DVNNGELNTH  300
ILLGHSNLNG LEGDDMIQHH HHHHRHHHSE GSGGHVTTNG SSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-202072641875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9LXG02e-69ZHD8_ARATH; Zinc-finger homeodomain protein 8
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-60homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]