PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0116s0018.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 310aa    MW: 34155.3 Da    PI: 9.6565
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0116s0018.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-18107157256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Kalax.0116s0018.1.p 107 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 157
                          59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.76E-15106166No hitNo description
SuperFamilySSF541713.07E-22107164IPR016177DNA-binding domain
SMARTSM003803.6E-36107170IPR001471AP2/ERF domain
PROSITE profilePS5103223.235107164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-31107165IPR001471AP2/ERF domain
PRINTSPR003675.1E-10108119IPR001471AP2/ERF domain
PfamPF008471.2E-12108157IPR001471AP2/ERF domain
PRINTSPR003675.1E-10130146IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEQQNPPFTA IDSNNIIGST LSQLLLAGAS GIDSIFSHCS PSTSFSGQTL EPLGTSVYLR  60
QRELVQKFAE ENRATLDFRR TVQHQIDLRS SMYAANMASV SLGKKKLYRG VRQRHWGKWV  120
AEIRLPQNRM RVWLGTYETA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPS SALGLDGSRL  180
SALKSSVDAK IQAICQKVKR EKANKLAKKK KNSASTTSVH LSAEKSESPS SYSSVSQPVQ  240
VSESWGTETV SPTVSEDGFW NGKSSSQQQA IWSPDGSITR TADGLDYDGY SLARIPSFDP  300
ELIWEVLAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-20103164163ATERF1
3gcc_A8e-20103164163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021642650.16e-96ethylene-responsive transcription factor ERF061
SwissprotQ9C7W22e-71ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1L6CAU22e-94A0A1L6CAU2_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB392e-94A0A1L6CB39_VERFO; AP2/ERF domain-containing transcription factor
STRINGXP_006439361.11e-94(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-64ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]