PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0115s0093.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 650aa MW: 71399.5 Da PI: 6.2266

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0115s0093.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00041	482	519	13	55
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ a K s + Le+++++++ +q Kalax.0115s0093.1.p 482 RQLIQDRIKELRELIPNgA------KCSIDSLLERTIKHMQFMQ 519 67799************77......7777779999999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.3E-29	5	156	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	10.741	469	518	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-5	482	530	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence Send to blast
MGADLQLLLR DLCSNTGWHY AIYWKLRLHH SRMVLTWEDA YFGSCGHNES QDYLPSGSYL 60 HDSLKLAMTA MSYDVYPFGE GIIGEVAASG NHRWVFGDKH VATSSSFVQE HNGWRSQFSA 120 GIKTVAIIAV APHGVVQLGS FYKIKENMKL VDQIKHSLSA LQISSVDVGA AGVLSNGGAL 180 GLPVDTDCRM LLHQESDTEQ LGQIYSKLMD GITPQLEVRM DSDASGISPT CDMDSVHALH 240 NLAFPFDDSG SGNSFPFHDS SNCESSDRVN FDLLDQYQDL HPSSHMNDKL DMQASLSHSE 300 SPAVSLKFST GCELHEALGP AFSKQLSNYD KRMEAGKVKP AVEFSEGMGS TSSQLAPSSG 360 SEHLLEAVVA NILNNIKDYK SDRACKSMQS VLTTDYMPEA SSYGDHRNLS ADPSSSYPSS 420 GKDDIPHCLR TSEAYFTRSP TMLSSTCVSS CTEPVSKSSE TSKGNKKRAR PGEGSKPRPR 480 DRQLIQDRIK ELRELIPNGA KCSIDSLLER TIKHMQFMQS MSEHADKLKQ CAESKMQSKD 540 AVEGSSSHEQ GSSWAVEVGG HLKVCRILVE NVNMNRQMLI EMLCEECSHF LEIAEVIKSL 600 GLTILKGATE ACGDKTWICF LVEAQKNKSM QRLDILWSLV HVLQPKSSA*

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence Send to blast

MGADLQLLLR DLCSNTGWHY AIYWKLRLHH SRMVLTWEDA YFGSCGHNES QDYLPSGSYL  60
HDSLKLAMTA MSYDVYPFGE GIIGEVAASG NHRWVFGDKH VATSSSFVQE HNGWRSQFSA  120
GIKTVAIIAV APHGVVQLGS FYKIKENMKL VDQIKHSLSA LQISSVDVGA AGVLSNGGAL  180
GLPVDTDCRM LLHQESDTEQ LGQIYSKLMD GITPQLEVRM DSDASGISPT CDMDSVHALH  240
NLAFPFDDSG SGNSFPFHDS SNCESSDRVN FDLLDQYQDL HPSSHMNDKL DMQASLSHSE  300
SPAVSLKFST GCELHEALGP AFSKQLSNYD KRMEAGKVKP AVEFSEGMGS TSSQLAPSSG  360
SEHLLEAVVA NILNNIKDYK SDRACKSMQS VLTTDYMPEA SSYGDHRNLS ADPSSSYPSS  420
GKDDIPHCLR TSEAYFTRSP TMLSSTCVSS CTEPVSKSSE TSKGNKKRAR PGEGSKPRPR  480
DRQLIQDRIK ELRELIPNGA KCSIDSLLER TIKHMQFMQS MSEHADKLKQ CAESKMQSKD  540
AVEGSSSHEQ GSSWAVEVGG HLKVCRILVE NVNMNRQMLI EMLCEECSHF LEIAEVIKSL  600
GLTILKGATE ACGDKTWICF LVEAQKNKSM QRLDILWSLV HVLQPKSSA*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011026006.1	0.0	PREDICTED: transcription factor bHLH155-like
Swissprot	P0C7P8	2e-98	LHWL1_ARATH; Transcription factor EMB1444

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	3e-87	conserved peptide upstream open reading frame 7

Link Out ? help Back to Top
Phytozome	Kalax.0115s0093.1.p