PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0115s0032.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 248aa MW: 26923.1 Da PI: 5.81 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 80 | 128 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrd + + r++lg+f t+eeAa+a+++a+k+++g Kalax.0115s0032.1.p 80 YRGIRRRP-WGKWAAEIRDSR----KgFRVWLGTFPTPEEAARAYDEAAKRIRG 128 9*******.**********42....249***********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.762 | 79 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-34 | 79 | 142 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-22 | 79 | 137 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-30 | 79 | 137 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-14 | 79 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-11 | 80 | 91 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.18E-32 | 80 | 137 | No hit | No description |
PRINTS | PR00367 | 6.2E-11 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MCGGAVISSL IGSNRGPDLI THDLWHQLDP SSDIFGFNSA TKSKTPITAA DQNPNEKKSE 60 KGANGAAGAD KPKRVRKTAY RGIRRRPWGK WAAEIRDSRK GFRVWLGTFP TPEEAARAYD 120 EAAKRIRGDK AKLNFPEKRL RTEPVESTHP SYEPVGPVLT FAGDAGLICG RNQGYVVGSG 180 LENTISDLES FLGLNDGSGS TDLNGQSDPV DLDWMDGLVM MENFPFDEPS GVNPDRSLLC 240 LNFDVQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-22 | 80 | 138 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 86 | KRVRKTAYRGIRRRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2P5R9Q9 | 2e-50 | A0A2P5R9Q9_GOSBA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 2e-41 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0115s0032.1.p |