PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0115s0007.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 1099aa MW: 122212 Da PI: 8.6958

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0115s0007.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ E +++++a +++G++ Wk++a+ + R+ +++ Kalax.0115s0007.1.p 45 QWSNKELQQFYEAYRKYGTN-WKKVAAAVR-SRSVEMV 80 6***************99.******9.9998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0036	42	90	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.51E-9	44	89	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	45	80	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.1E-4	45	79	IPR009057	Homeodomain-like
CDD	cd00167	2.30E-5	46	80	No hit	No description
Pfam	PF06584	1.9E-32	588	688	IPR033471	DIRP domain
SMART	SM01135	6.9E-59	588	689	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1099 aa Download sequence Send to blast
MAPSRKTGNA NKQSPTANKI VAKKDEEDAK TKQKKRKLGD MLGSQWSNKE LQQFYEAYRK 60 YGTNWKKVAA AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLIAMVTDH YCVMEKSDSE 120 QESNEGRDQE APQKAQKRSR RKFRNSKFKD LDHNLPDHSP SRFVGSTSDC LSLLKANLPG 180 SEPRVVGKRT PRVPVVHTSD KDFWDKNFSA KPGRKFKMNA DDHVAHEIAL ALTKASQKDK 240 SPRISQSNRA SKRKIGNVSS PAKSDDRMHF IEGTSAQLQG SARDEQDHQG SMGSIDVDNL 300 RSGSTLRDRE GFGTLDIQKK GLRSNGKKFI AETGNDHLDD MKEACSGTEE QNSSAFSKNR 360 GFENPKQLIS KGQKQRNKKI LFDEDESAAF EALNTLADLS LTMPEPFLDN DNRGADINTS 420 SAKSKGNNSF GGDEDTTIKF ISSDRGGNVG TIPDSEDKTG IRKRKPKSLP FCMENLKMEP 480 HLYHTGNFPN SEDVEDANKS LSKGHHKEGE HVNASTLNVS RESEGDFSSK NRNWRKRDLP 540 KSVNLKDTNY SVQVESGRPT DGILNLKAKL ANCLSWRKAQ RWCTFEWFYS AIDYPWFARR 600 EFVEYLDHVG LGHIPRLTRV EWGVIRSSLG KPRRFSQQFL KEEKEKLNQY RESVRNHYTE 660 LRLGAREGLP TDLARPLSVG QRVIAIHPKT REIHDGSVLT VDRSRCHVQF DKPDLGVEFV 720 MDIDCMPLNP LENMPASLAI NKLSENHKGV KLNGLASHHS ASLHPNGNID NPDDPLLRPL 780 SDSLVDNSKK TVKDNITSSN VQAKARSSGP ISGQEAADQP SFLAQSKEAD VKALYEMTCA 840 LDKKEAIVSE FKRMNDEVEE NKRSDSLFEV PESFSKRYAS VLVQLDEVND QVTLALRCLR 900 QRNTYQGSFG LISAKPALVD IGVVTGTLNY STSDTSKQET HVPEIVEGST SKAQKMVNAA 960 MKAMSSLKSS VHDGVEEAID YLNTQLSQEE PNVSADRSVP VPAAPGKQRA INSADPKMNT 1020 TPDSNAQIPS ELITNCVATL FMIQKCTERE FPPADVAQIL DSAVTSLQPC CSQNLPIYAD 1080 IQKCMGIIRS QILALIRI*

Sequence ? help Back to Top

Protein Sequence Length: 1099 aa Download sequence Send to blast

MAPSRKTGNA NKQSPTANKI VAKKDEEDAK TKQKKRKLGD MLGSQWSNKE LQQFYEAYRK  60
YGTNWKKVAA AVRSRSVEMV EALYSMNRAY LSLPEGTASV AGLIAMVTDH YCVMEKSDSE  120
QESNEGRDQE APQKAQKRSR RKFRNSKFKD LDHNLPDHSP SRFVGSTSDC LSLLKANLPG  180
SEPRVVGKRT PRVPVVHTSD KDFWDKNFSA KPGRKFKMNA DDHVAHEIAL ALTKASQKDK  240
SPRISQSNRA SKRKIGNVSS PAKSDDRMHF IEGTSAQLQG SARDEQDHQG SMGSIDVDNL  300
RSGSTLRDRE GFGTLDIQKK GLRSNGKKFI AETGNDHLDD MKEACSGTEE QNSSAFSKNR  360
GFENPKQLIS KGQKQRNKKI LFDEDESAAF EALNTLADLS LTMPEPFLDN DNRGADINTS  420
SAKSKGNNSF GGDEDTTIKF ISSDRGGNVG TIPDSEDKTG IRKRKPKSLP FCMENLKMEP  480
HLYHTGNFPN SEDVEDANKS LSKGHHKEGE HVNASTLNVS RESEGDFSSK NRNWRKRDLP  540
KSVNLKDTNY SVQVESGRPT DGILNLKAKL ANCLSWRKAQ RWCTFEWFYS AIDYPWFARR  600
EFVEYLDHVG LGHIPRLTRV EWGVIRSSLG KPRRFSQQFL KEEKEKLNQY RESVRNHYTE  660
LRLGAREGLP TDLARPLSVG QRVIAIHPKT REIHDGSVLT VDRSRCHVQF DKPDLGVEFV  720
MDIDCMPLNP LENMPASLAI NKLSENHKGV KLNGLASHHS ASLHPNGNID NPDDPLLRPL  780
SDSLVDNSKK TVKDNITSSN VQAKARSSGP ISGQEAADQP SFLAQSKEAD VKALYEMTCA  840
LDKKEAIVSE FKRMNDEVEE NKRSDSLFEV PESFSKRYAS VLVQLDEVND QVTLALRCLR  900
QRNTYQGSFG LISAKPALVD IGVVTGTLNY STSDTSKQET HVPEIVEGST SKAQKMVNAA  960
MKAMSSLKSS VHDGVEEAID YLNTQLSQEE PNVSADRSVP VPAAPGKQRA INSADPKMNT  1020
TPDSNAQIPS ELITNCVATL FMIQKCTERE FPPADVAQIL DSAVTSLQPC CSQNLPIYAD  1080
IQKCMGIIRS QILALIRI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018826069.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018826070.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018826071.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018826072.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018826073.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X1
Refseq	XP_018826074.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X2
TrEMBL	A0A2I4F338	0.0	A0A2I4F338_JUGRE; protein ALWAYS EARLY 3 isoform X1
TrEMBL	A0A2I4F360	0.0	A0A2I4F360_JUGRE; protein ALWAYS EARLY 3 isoform X2
STRING	EOY06452	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Link Out ? help Back to Top
Phytozome	Kalax.0115s0007.1.p