PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0115s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 37415.4 Da PI: 6.0366 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.6e-17 | 43 | 91 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+++++g Kalax.0115s0005.1.p 43 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 91 56******.**********965...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.9E-33 | 42 | 105 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.495 | 42 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.74E-29 | 42 | 98 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-20 | 43 | 99 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-7 | 43 | 54 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-28 | 43 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-11 | 45 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-7 | 65 | 81 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MNTTQDTTSI REQKGLSLRP TGTAYGSECR RIGRRRQAEP GRFLGVRRRP WGRYAAEIRD 60 PTTKERHWLG TFDTAHEAAL AYDRAALSMK GTQARTNFVY PDSSGSPLHS LLTPFSPSPS 120 VFNADHQCSK QKLTSSQTIT CCHSCVCRSV QCPYATQTSL YDHQKAGDDH VLFGVGSEHN 180 SGDLSCIVPE VCLKPPASTC TDDSSKDYPS LGSPRTDQNW GFKNSTASDA NLSPELQMQY 240 DNLKDVASMT TTVVKNADHE ISWISRLSNS NGFWSDAEDQ NLLWEMNYGE LAALISNPMK 300 MGEENNVSFQ VATPSSASAA TYSASIADFG DVIDFSYPLF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 33 | 108 | 5 | 81 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Swissprot | Q6J9Q2 | 2e-46 | ERF86_ARATH; Ethylene-responsive transcription factor ERF086 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 2e-48 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0115s0005.1.p |
Publications ? help Back to Top | |||
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