PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0114s0081.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family M-type_MADS
Protein Properties Length: 336aa    MW: 34157 Da    PI: 4.6701
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0114s0081.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.94.1e-2181127349
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                           e ++nr vtfskR+ g++KKA+EL++LC++e a+++fs+  k++ +
  Kalax.0114s0081.1.p  81 MEKETNRLVTFSKRKSGLFKKANELCTLCGVECALVVFSPAEKVFSF 127
                          5889***************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.36271131IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-2771130IPR002100Transcription factor, MADS-box
CDDcd002656.56E-3372143No hitNo description
SuperFamilySSF554551.83E-2672145IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-187393IPR002100Transcription factor, MADS-box
PfamPF003195.3E-2380127IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-1893108IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-18108129IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MASSSDQVSN PPVTTSTITS LTVAVSASSP TDAVPVAPSD AMPPPPAPVA PSDAPAPPSD  60
AAPPSSSGVK RGRGKIRMRK MEKETNRLVT FSKRKSGLFK KANELCTLCG VECALVVFSP  120
AEKVFSFGIP SVNDVVDRYL SGNPPNPDPS QPPQPAPVQV PQNTEDGQNQ GQADTLIKKL  180
SDELSNLTDA LEASRQNGLT LDKMREERKA AHWVAIPVSD MGGRQLDALK KGLSDLKGIV  240
CSIAEQLFQA SASMSSVPAP FSFQGAGPPP SGGFPGGPSN YEPDEAGPSG GFPGGPSNYG  300
PDEAGPSGGF PGGPSDYGPN EAGPSGGASG GGFGF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-32AGAMOUS-like 62