PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0114s0058.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 261aa MW: 28295.6 Da PI: 7.0331 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 50.4 | 3e-16 | 217 | 251 | 1 | 33 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 C nCgt + Tp++Rrgp+g++tLCnaCGl+++ k Kalax.0114s0058.2.p 217 CKNCGTGSkhTPMMRRGPEGPRTLCNACGLKWANK 251 ******9999**********************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.051 | 79 | 114 | IPR010399 | Tify domain |
SMART | SM00979 | 1.0E-11 | 79 | 114 | IPR010399 | Tify domain |
Pfam | PF06200 | 2.4E-13 | 83 | 113 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.3E-15 | 146 | 188 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.57 | 146 | 188 | IPR010402 | CCT domain |
SuperFamily | SSF57716 | 3.04E-9 | 211 | 252 | No hit | No description |
PROSITE profile | PS50114 | 8.524 | 211 | 246 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.5E-6 | 211 | 260 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.3E-13 | 215 | 251 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.32E-11 | 216 | 251 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 217 | 244 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.0E-13 | 217 | 251 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MSSDYSNESI NMQTLMENAD EDAFVDGEQF ADSGVAGQFE HHLVGDDGVR DGAFTDPIEA 60 VHPHRHSMSA PPPDVAFSTA CSPSQLTLSF HGEVYVFDDV SAEKVQAVLL LLGGYEVPGG 120 DHTGLKPQNQ RSAGDVYGRA MTPTLRAAAL RRFREKKKDR CFEKKICYTV RKEVAHRMKR 180 NKGQFVSSKA SSEDIGSGSS DGNAYPGAVK EEHETSCKNC GTGSKHTPMM RRGPEGPRTL 240 CNACGLKWAN KVVLGQCPRN * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 150 | 158 | RRFREKKKD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028093060.1 | 1e-77 | GATA transcription factor 28-like isoform X1 | ||||
Refseq | XP_028093061.1 | 7e-78 | GATA transcription factor 28-like isoform X2 | ||||
Swissprot | Q8GXL7 | 1e-56 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A161ZV58 | 2e-75 | A0A161ZV58_DAUCS; Uncharacterized protein | ||||
TrEMBL | F6I1U0 | 1e-75 | F6I1U0_VITVI; Uncharacterized protein | ||||
STRING | VIT_03s0038g00480.t01 | 2e-76 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51600.2 | 2e-52 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0114s0058.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|