PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0114s0058.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 276aa    MW: 30170 Da    PI: 7.5766
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0114s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.41.2e-15217251133
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                          C nCgt +  Tp++Rrgp+g++tLCnaCGl+++ k
  Kalax.0114s0058.1.p 217 CKNCGTGSkhTPMMRRGPEGPRTLCNACGLKWANK 251
                          ******9999**********************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.05179114IPR010399Tify domain
SMARTSM009791.0E-1179114IPR010399Tify domain
PfamPF062002.6E-1383113IPR010399Tify domain
PROSITE profilePS5101712.57146188IPR010402CCT domain
PfamPF062031.4E-15146188IPR010402CCT domain
SMARTSM004013.6E-9211265IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.99E-10211256No hitNo description
PROSITE profilePS501148.524211246IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.8E-13215255IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.61E-11216260No hitNo description
PROSITE patternPS003440217244IPR000679Zinc finger, GATA-type
PfamPF003204.6E-13217251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MSSDYSNESI NMQTLMENAD EDAFVDGEQF ADSGVAGQFE HHLVGDDGVR DGAFTDPIEA  60
VHPHRHSMSA PPPDVAFSTA CSPSQLTLSF HGEVYVFDDV SAEKVQAVLL LLGGYEVPGG  120
DHTGLKPQNQ RSAGDVYGRA MTPTLRAAAL RRFREKKKDR CFEKKICYTV RKEVAHRMKR  180
NKGQFVSSKA SSEDIGSGSS DGNAYPGAVK EEHETSCKNC GTGSKHTPMM RRGPEGPRTL  240
CNACGLKWAN KVRSRRHPLS PTRVLELFLL VMILL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150158RRFREKKKD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093060.11e-76GATA transcription factor 28-like isoform X1
RefseqXP_028093061.11e-76GATA transcription factor 28-like isoform X2
SwissprotQ8GXL74e-56GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A161ZV582e-74A0A161ZV58_DAUCS; Uncharacterized protein
TrEMBLF6I1U02e-74F6I1U0_VITVI; Uncharacterized protein
STRINGVIT_03s0038g00480.t014e-75(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-52ZIM-LIKE 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]