PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0114s0052.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 749aa    MW: 81884.7 Da    PI: 6.6053
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0114s0052.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-10293349155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Kalax.0114s0052.1.p 293 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEDKAARAYDLAALKYWG 349
                          57*******************4444.2455535555.7799999*************98 PP
2AP246.68.7e-15392443155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Kalax.0114s0052.1.p 392 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 443
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.18E-14293359IPR016177DNA-binding domain
PfamPF008473.8E-8293349IPR001471AP2/ERF domain
CDDcd000183.27E-18293359No hitNo description
Gene3DG3DSA:3.30.730.103.9E-11294358IPR001471AP2/ERF domain
PROSITE profilePS5103217.016294357IPR001471AP2/ERF domain
SMARTSM003805.3E-22294363IPR001471AP2/ERF domain
PRINTSPR003676.4E-6295306IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-17392452IPR016177DNA-binding domain
CDDcd000182.39E-24392451No hitNo description
PfamPF008471.1E-9392443IPR001471AP2/ERF domain
PROSITE profilePS5103219.045393451IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-18393451IPR001471AP2/ERF domain
SMARTSM003802.8E-33393457IPR001471AP2/ERF domain
PRINTSPR003676.4E-6433453IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MNNWLAFSLS PQHQHQHHQG DQHHSRLQGF HSDDMSAATD ECFDLSSSSA RPQPPHPFGV  60
LDEASAGFSD RNNSNTTNQQ THDWNSAENG CYKTTTSEIN NGSQSLQDQH LPKLENFLGS  120
HSFSNNHYHH HSTAAGDYMF STESMPETAA HNNNNNQAFN STNNSIGLSM IKTWLRSNQA  180
AGTGQMQQPL QQQIPNSNEI FNNNMSSGDG DSGREALCGV DNNNTSNKAL TGAQTLSLSM  240
STGSQSNSSA PLPLLDGGDG VDMQQKTALD SQTGAVVETV PRKSLDTFGQ RTSIYRGVTR  300
HRWTGRYEAH LWDNSCRREG QTRKGRQGGY DKEDKAARAY DLAALKYWGT TTTTNFPISS  360
YEKELEEMKH MTRQEYVASL RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY  420
LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMNRYDVNSI LESSTLPIGG AAKRLKDAEQ  480
AIELTGAMEG LISQRSALNH DSVGSHLSDG MSYGSSGQWP TIAFHHPPYN NAMHQHYSPY  540
ARVWCKQEQD STSEGTTHQS FQDFHQLQLG SSGATHNFFQ QPTTSVLHNL MSLDSASMEH  600
SSGSNSVIYG NGESNGNGYG AGGGYGASVN NNGGFVMPVG SALMGNEDNN SEVKASGYAT  660
ENIYGNTNAY NQARTLYYLQ QQQQQQQQQQ QSLFKGGGYD QDSGCNSWVP TGIPCSGPKG  720
TGGNTNNTAA TCHVAGNQPF TVWNETWK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872279.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8L3U31e-139BBM1_BRANA; AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A2C9USA60.0A0A2C9USA6_MANES; Uncharacterized protein
STRINGcassava4.1_002713m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-132AP2 family protein