PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0114s0019.3.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 852aa    MW: 94823.6 Da    PI: 6.6486
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0114s0019.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.8e-2344145199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae+       +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F  
  Kalax.0114s0019.3.p  44 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSLQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI- 131
                          99*****************************9777666.49************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           ++++ +l+++++r+
  Kalax.0114s0019.3.p 132 -WNDKNQLLLGIRRS 145
                          .7888889***9997 PP
2Auxin_resp121.46.8e-40170253183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaast+s F+++YnPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  Kalax.0114s0019.3.p 170 AAHAASTNSRFSIFYNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 253
                          79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.93E-4730173IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-4138159IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-2143144No hitNo description
SMARTSM010196.1E-2444146IPR003340B3 DNA binding domain
PfamPF023628.4E-2244145IPR003340B3 DNA binding domain
PROSITE profilePS5086312.5244146IPR003340B3 DNA binding domain
PfamPF065071.5E-34170253IPR010525Auxin response factor
SuperFamilySSF542777.85E-7716792No hitNo description
PROSITE profilePS5174523.928717801IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MHADVETDEV YAQMTLQPLS PQEQKDPYLP ADFGAPTKQP TNYFCKTLTA SDTSTHGGFS  60
VPRRAAEKVF PPLDFSLQPP AQELIARDLH DNEWKFRHIF RGQPKRHLLT TGWSVFVSAK  120
RLVAGDSVLF IWNDKNQLLL GIRRSSRPQT VMPSSVLSSD SMHLGLLAAA AHAASTNSRF  180
SIFYNPRASP SEFVIPLTKY VKAVYHTRVS VGMRFRMLFE TEESSVRRYM GTITGISDLD  240
PVRWPNSHWR SVKVGWDEST AGERQPRVSL WEIEPLTTFP MYPSPFPFRL KRSWPGFKEE  300
DMGMNSPLMW LRGDNGQSLN FQGMGVNPWM QMQQRMDASM FGLQSDMYQA MAAAAFQEMK  360
QAQPPNLLQF QQPQPVGNAP ACLIPPQMLH QTQAQLSYLQ SVQESQAQAH GRAEAHAHAQ  420
SQAQAQAQAQ MQVQSQSQSQ SGSLSHSQTQ SVQNNQIQRQ LQQQSSFNSH HGQPDQRQQM  480
RSMIHQRVPN MVSNTPQYVS NAQSQWPSMQ PISTLCQQQS FTGSDGNLVS VSSPVVSPLQ  540
TLLGSFATDE SLHLFNLPCN TPVPAVSSSD WPSKRVALQH DPHPHPPSPG SQRLLSQLEQ  600
QLGESQTNLL HNIVSLPPFP GRECSIEHEG STDPKSHLLF GVNLDPPSLL LQNGISNLRG  660
VGGDCESSPM PFASSSFMSN SGSDFTLNPT MTPSSCIDES GFLQSPENVG EANPLNKTFV  720
KVYKSGSFGR SLDITKFSSY QELRSELARM FGLEGLLEDP MRSGWQLVFV DRENDVLLLG  780
DDPWPEFVNS VWCIKILSPQ EVQQMGKRGL ELLNSVPIQR LSSNGCEEYS SSRQESRNLS  840
TGITSVGSLE Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1231274115388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640725.10.0auxin response factor 6-like isoform X2
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A2C9U6V80.0A0A2C9U6V8_MANES; Auxin response factor
STRINGcassava4.1_001357m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]