PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0112s0088.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 229aa    MW: 25886.1 Da    PI: 6.1718
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0112s0088.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-17550348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +WT+eEd ll+++++q+G g W++++   g++R++k+c++rw++yl
  Kalax.0112s0088.1.p  5 AWTEEEDHLLKKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                         7*******************************************97 PP
2Myb_DNA-binding41.62.8e-1356100147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +  +E + +++++  lG++ W++Ia++++ gRt++++k++w+ +
  Kalax.0112s0088.1.p  56 RGTFADDEVLFIIKLHSNLGNR-WSLIASRLP-GRTANDVKNYWNCH 100
                          67888999999***********.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.393154IPR017930Myb domain
SMARTSM007174.2E-13252IPR001005SANT/Myb domain
PfamPF002491.3E-15550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-19557IPR009057Homeodomain-like
SuperFamilySSF466894.77E-26597IPR009057Homeodomain-like
CDDcd001676.50E-11550No hitNo description
PROSITE profilePS5129417.95955105IPR017930Myb domain
SMARTSM007171.8E-1255103IPR001005SANT/Myb domain
PfamPF002497.4E-125698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2258105IPR009057Homeodomain-like
CDDcd001678.78E-961101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIEQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIRRGTFA  60
DDEVLFIIKL HSNLGNRWSL IASRLPGRTA NDVKNYWNCH LSKKLSKAHN NHETMSPVTT  120
ANKGGHFTAC QYQTLTSISA TSLIGPHEDQ PSLMHLEDTY GLELELVGSD GMYITCGRDE  180
ADGQNEVNKF ASELEFEGTK MTAGREISSM DNHIGDWDEV IFDMDLWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2051056105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-19510560159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-19510560159MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-2061057105C-Myb DNA-Binding Domain
1msf_C3e-2061057105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007030250.25e-70PREDICTED: transcription factor MYB75
RefseqXP_013442371.15e-70transcription factor MYB1
SwissprotQ9FNV92e-51MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2K3NSC72e-69A0A2K3NSC7_TRIPR; Transcription factor MYB 113-like protein
STRINGEOY107524e-70(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.16e-54myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]