PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0112s0023.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 279aa    MW: 30548.5 Da    PI: 5.1128
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0112s0023.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-1898148155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr +  +g+Wv+eIr p++   ++r++lg+f t+e+Aa+a++ a+++++g
  Kalax.0112s0023.1.p  98 PVYRGVRMRN-WGKWVSEIRQPRK---KTRIWLGTFPTPEMAARAHDVAALSIKG 148
                          68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-1398148IPR001471AP2/ERF domain
SMARTSM003808.8E-3799162IPR001471AP2/ERF domain
PROSITE profilePS5103223.49999156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-3299157IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2299157IPR016177DNA-binding domain
PRINTSPR003672.3E-10100111IPR001471AP2/ERF domain
CDDcd000183.20E-32100158No hitNo description
PRINTSPR003672.3E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MIKLATNSII VGQNNKVGES EKALLGYFSE VVGFCYMDEQ VSSETESSSV LESAMKSEPL  60
FPKLKLKPSR AVTKRARKQE SCSGDKMVVA VGGRDKHPVY RGVRMRNWGK WVSEIRQPRK  120
KTRIWLGTFP TPEMAARAHD VAALSIKGKN AILNFPELVS SLPRPASSSP RDVQEAAAKA  180
AAMENLGVSE VGLSEEASDE LSEIVELPSL DACWDNSAES SRNEFVFVDS VDGGGWLYTP  240
PWLQSVEECG YCGDQMIPAE QGNYGGFDAM FPDERRSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1792157473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007012129.11e-71PREDICTED: dehydration-responsive element-binding protein 3
RefseqXP_022730459.19e-72dehydration-responsive element-binding protein 3-like
SwissprotQ9LYD32e-63DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A200QDK78e-72A0A200QDK7_9MAGN; AP2/ERF domain
STRINGEOY297484e-71(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-54ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]