PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0109s0028.4.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 584aa    MW: 64125.8 Da    PI: 8.0141
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0109s0028.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.94.9e-1019645299
                         .EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3 52 yrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         ++++++r++lt+GW+ Fv++++L  gD v+F   + +++el+++++r+
  Kalax.0109s0028.4.p 19 FSGQPRRHLLTSGWSLFVSQKNLGLGDAVLFL--RGESGELRLGIRRA 64
                         38999***************************..449999*****996 PP
2Auxin_resp109.73e-3689170182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +a+a+ tk+vF+v+Y+Pra+ +eFv++++k++k++ +++  G++fkm+fe++ds+err+sG+v+g+ dldp+rWpnSkWr+L
  Kalax.0109s0028.4.p  89 VANAILTKNVFQVFYSPRATLAEFVIPIQKYMKSIIHPIPTGTKFKMRFEMDDSPERRCSGIVTGMGDLDPYRWPNSKWRCL 170
                          68999****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.941165IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-121572IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-81764IPR015300DNA-binding pseudobarrel domain
CDDcd100173.78E-61763No hitNo description
PfamPF023621.3E-71864IPR003340B3 DNA binding domain
PfamPF065076.4E-3189170IPR010525Auxin response factor
SuperFamilySSF542772.35E-9445528No hitNo description
PROSITE profilePS5174520.635449544IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MWYISLSQAI KGLNTTIYFS GQPRRHLLTS GWSLFVSQKN LGLGDAVLFL RGESGELRLG  60
IRRAVRPRNC LPDSAIGNQS SLPTVLSSVA NAILTKNVFQ VFYSPRATLA EFVIPIQKYM  120
KSIIHPIPTG TKFKMRFEMD DSPERRCSGI VTGMGDLDPY RWPNSKWRCL MVRWDEDHAS  180
EHQERVSPWE VDASICLPPP MSFHGSPQLK KLRTCLQSSL QSGLADDLST GGSGFLDLEE  240
SMRSSSKVLR GQENSGFRSP YLLNQPLGSS KPSQATVLEG LNIQSTGYTT FGKSDVFPTV  300
LQGQEVCPYS AWRKPSIGCC NLSSTHQRPE PSFYPVASAG SRSVYFPLHS GIQKEMQGPA  360
VSLSSRFAGG SGPFGRPPVY NGMDIDEPRR FVPMNAQKVP VDAAASLPHS LEAAAKDGRN  420
ETSSAAPTAC RLFGISLTGE TSTQNASKRS CTKVHKQGSM VGRAIDLSKL NGYTDLLFEL  480
EWLFAMEGLL RDPEKGWRIL YTDSENDMMV VGDDPWHEFC EVVSKIHIYT KDEVEKLNIG  540
VVASDDTQSC LEEAPDGAGV SKSSSVGQPE SYPTKKKGLE RLK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-5019192180353Auxin response factor 1
4ldy_B3e-5019192180353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279163.10.0LOW QUALITY PROTEIN: auxin response factor 4
SwissprotQ9ZTX91e-173ARFD_ARATH; Auxin response factor 4
TrEMBLD7SKV90.0D7SKV9_VITVI; Auxin response factor
STRINGVIT_06s0004g03130.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.11e-175auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]