PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0109s0028.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 691aa    MW: 76271.5 Da    PI: 7.3186
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0109s0028.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3758.6e-2470171199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L  gD v+F  
  Kalax.0109s0028.2.p  70 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTSGWSLFVSQKNLGLGDAVLFL- 157
                          99****************************963.3445679************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + +++el+++++r+
  Kalax.0109s0028.2.p 158 -RGESGELRLGIRRA 171
                          .449999*****996 PP
2Auxin_resp109.43.8e-36196277182
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                          +a+a+ tk+vF+v+Y+Pra+ +eFv++++k++k++ +++  G++fkm+fe++ds+err+sG+v+g+ dldp+rWpnSkWr+L
  Kalax.0109s0028.2.p 196 VANAILTKNVFQVFYSPRATLAEFVIPIQKYMKSIIHPIPTGTKFKMRFEMDDSPERRCSGIVTGMGDLDPYRWPNSKWRCL 277
                          68999****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-4063179IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-4264182IPR015300DNA-binding pseudobarrel domain
CDDcd100173.31E-2368170No hitNo description
PROSITE profilePS5086312.91570172IPR003340B3 DNA binding domain
SMARTSM010192.2E-2470172IPR003340B3 DNA binding domain
PfamPF023624.5E-2270171IPR003340B3 DNA binding domain
PfamPF065078.1E-31196277IPR010525Auxin response factor
SuperFamilySSF542773.04E-9552635No hitNo description
PROSITE profilePS5174520.635556651IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MEMPTYDLQP QIFCRVLNVQ RLANKENDEV YTQLSLLPQP ELAGLKLSGS DMLSENGSDE  60
LALKSTPHMF CKTLTASDTS THGGFSVPRR AAEDCFPPLD YKQQRPSQEL VAKDLHGVEW  120
RFRHIYRGQP RRHLLTSGWS LFVSQKNLGL GDAVLFLRGE SGELRLGIRR AVRPRNCLPD  180
SAIGNQSSLP TVLSSVANAI LTKNVFQVFY SPRATLAEFV IPIQKYMKSI IHPIPTGTKF  240
KMRFEMDDSP ERRCSGIVTG MGDLDPYRWP NSKWRCLMVR WDEDHASEHQ ERVSPWEVDA  300
SICLPPPMSF HGSPQLKKLR TCLQSSLQSG LADDLSTGGS GFLDLEESMR SSSKVLRGQE  360
NSGFRSPYLL NQPLGSSKPS QATVLEGLNI QSTGYTTFGK SDVFPTVLQG QEVCPYSAWR  420
KPSIGCCNLS STHQRPEPSF YPVASAGSRS VYFPLHSGIQ KEMQGPAVSL SSRFAGGSGP  480
FGRPPVYNGM DIDEPRRFVP MNAQKVPVDA AASLPHSLEA AAKDGRNETS SAAPTACRLF  540
GISLTGETST QNASKRSCTK VHKQGSMVGR AIDLSKLNGY TDLLFELEWL FAMEGLLRDP  600
EKGWRILYTD SENDMMVVGD DPWHEFCEVV SKIHIYTKDE VEKLNIGVVA SDDTQSCLEE  660
APDGAGVSKS SSVGQPESYP TKKKGLERLK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-101229963353Auxin response factor 1
4ldy_B1e-101229963353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285019.20.0PREDICTED: auxin response factor 4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLD7SKV90.0D7SKV9_VITVI; Auxin response factor
STRINGVIT_06s0004g03130.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]