PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0109s0028.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ARF | ||||||||
Protein Properties | Length: 788aa MW: 86403.7 Da PI: 7.4608 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.8 | 1e-23 | 166 | 267 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L gD v+F Kalax.0109s0028.1.p 166 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTSGWSLFVSQKNLGLGDAVLFL- 253 99****************************963.3445679************************************************. PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 + +++el+++++r+ Kalax.0109s0028.1.p 254 -RGESGELRLGIRRA 267 .449999*****996 PP | |||||||
2 | Auxin_resp | 109.1 | 4.6e-36 | 292 | 373 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+ tk+vF+v+Y+Pra+ +eFv++++k++k++ +++ G++fkm+fe++ds+err+sG+v+g+ dldp+rWpnSkWr+L Kalax.0109s0028.1.p 292 VANAILTKNVFQVFYSPRATLAEFVIPIQKYMKSIIHPIPTGTKFKMRFEMDDSPERRCSGIVTGMGDLDPYRWPNSKWRCL 373 68999****************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-40 | 159 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.15E-42 | 160 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.49E-23 | 164 | 266 | No hit | No description |
SMART | SM01019 | 2.2E-24 | 166 | 268 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-22 | 166 | 267 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.915 | 166 | 268 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 9.7E-31 | 292 | 373 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.2E-5 | 649 | 737 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 3.63E-9 | 649 | 732 | No hit | No description |
PROSITE profile | PS51745 | 20.635 | 653 | 748 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence Send to blast |
MELGGNHAVR LEGRKRSYLS CDGDCGDKAG CARCWSSSSS SSSSSNSPAS LASSIYLELW 60 HACAGPLTSL PKKGNVVVYF PQGHLEQVAS NSPFSPMEMP TYDLQPQIFC RVLNVQRLAN 120 KENDEVYTQL SLLPQPELAG LKLSGSDMLS ENGSDELALK STPHMFCKTL TASDTSTHGG 180 FSVPRRAAED CFPPLDYKQQ RPSQELVAKD LHGVEWRFRH IYRGQPRRHL LTSGWSLFVS 240 QKNLGLGDAV LFLRGESGEL RLGIRRAVRP RNCLPDSAIG NQSSLPTVLS SVANAILTKN 300 VFQVFYSPRA TLAEFVIPIQ KYMKSIIHPI PTGTKFKMRF EMDDSPERRC SGIVTGMGDL 360 DPYRWPNSKW RCLMVRWDED HASEHQERVS PWEVDASICL PPPMSFHGSP QLKKLRTCLQ 420 SSLQSGLADD LSTAGGSGFL DLEESMRSSS KVLRGQENSG FRSPYLLNQP LGSSKPSQAT 480 VLEGLNIQST GYTTFGKSDV FPTVLQGQEV CPYSAWRKPS IGCCNLSSTH QRPEPSFYPV 540 ASAGSRSVYF PLHSGIQKEM QGPAVSLSSR FAGGSGPFGR PPVYNGMDID EPRRFVPMNA 600 QKVPVDAAAS LPHSLEAAAK DGRNETSSAA PTACRLFGIS LTGETSTQNA SKRSCTKVHK 660 QGSMVGRAID LSKLNGYTDL LFELEWLFAM EGLLRDPEKG WRILYTDSEN DMMVVGDDPW 720 HEFCEVVSKI HIYTKDEVEK LNIGVVASDD TQSCLEEAPD GAGVSKSSSV GQPESYPTKK 780 KGLERLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-118 | 39 | 395 | 2 | 353 | Auxin response factor 1 |
4ldy_B | 1e-118 | 39 | 395 | 2 | 353 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021279163.1 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 4 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | D7SKV9 | 0.0 | D7SKV9_VITVI; Auxin response factor | ||||
STRING | VIT_06s0004g03130.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0109s0028.1.p |