PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kalax.0109s0026.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 205aa MW: 22836.5 Da PI: 5.1148 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 23.3 | 1.3e-07 | 93 | 181 | 11 | 99 |
NF-YC 11 ekatdfknhelPlarikkilkade.dvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e++++ ++ +P+ ri+ i k++ d ++s ea ll ka e f+ +l ++ ++ + +r+ + d ++v++ + fl d +p++ Kalax.0109s0026.2.p 93 EEEEEGAKCLFPMNRIRMIAKSEGgDDMRLSHEAIFLLNKASEKFLGHLCEEAYGETVN-ERKNFVAYDHLSSVSKNQRLCFLSDLIPEK 181 44555667889**********986256669************************99985.677777788889999***********9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.67E-11 | 95 | 182 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.0E-14 | 103 | 180 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.5E-9 | 103 | 164 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 205 aa Download sequence Send to blast |
MRNTRSTPRK GQKPTTKTKK KGHVSNGDIT EAEVASPAAL WSPDSIPEPP YSDSVGSDNK 60 SVAEEEDEVE EGAEEQEKKT VLKQNGKKRK VEEEEEEGAK CLFPMNRIRM IAKSEGGDDM 120 RLSHEAIFLL NKASEKFLGH LCEEAYGETV NERKNFVAYD HLSSVSKNQR LCFLSDLIPE 180 KISVEEALKE RQLANCDPRA PTTN* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 77 | 88 | KKTVLKQNGKKR |
2 | 81 | 89 | LKQNGKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021654289.1 | 8e-30 | glutamic acid-rich protein | ||||
TrEMBL | A0A0K9QJH2 | 2e-27 | A0A0K9QJH2_SPIOL; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2P5DEY0 | 1e-27 | A0A2P5DEY0_PARAD; Transcription initiation factor |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07980.1 | 9e-24 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kalax.0109s0026.2.p |