PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0109s0026.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | NF-YC | ||||||||
Protein Properties | Length: 206aa MW: 22907.6 Da PI: 5.1148 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 27.5 | 6.6e-09 | 93 | 182 | 11 | 99 |
NF-YC 11 ekatdfknhelPlarikkilkade.dvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e++++ ++ +P+ ri+ i k++ d ++s ea ll ka e f+ +l ++ ++ + +++ + ++a+v++ + fl d +p++ Kalax.0109s0026.1.p 93 EEEEEGAKCLFPMNRIRMIAKSEGgDDMRLSHEAIFLLNKASEKFLGHLCEEAYGETVNERKNFVAYDHLSASVSKNQRLCFLSDLIPEK 182 44555667889**********986256669********************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.1E-13 | 95 | 183 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-9 | 103 | 165 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.2E-16 | 103 | 181 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MRNTRSTPRK GQKPTTKTKK KGHVSNGDIT EAEVASPAAL WSPDSIPEPP YSDSVGSDNK 60 SVAEEEDEVE EGAEEQEKKT VLKQNGKKRK VEEEEEEGAK CLFPMNRIRM IAKSEGGDDM 120 RLSHEAIFLL NKASEKFLGH LCEEAYGETV NERKNFVAYD HLSASVSKNQ RLCFLSDLIP 180 EKISVEEALK ERQLANCDPR APTTN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 88 | KKTVLKQNGKKR |
2 | 81 | 89 | LKQNGKKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9QJH2 | 8e-29 | A0A0K9QJH2_SPIOL; Uncharacterized protein (Fragment) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 8e-25 | nuclear factor Y, subunit C10 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0109s0026.1.p |