PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0107s0043.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 353aa    MW: 38648.7 Da    PI: 4.3947
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0107s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.4e-184594255
                  AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y GVr ++ +grWvAeI+d       +  r++lg+++taeeA +a+++a+  l+g
  Kalax.0107s0043.1.p 45 RYIGVRKRP-SGRWVAEIKDiR-----NsIRVWLGTYDTAEEAVRAYDEAAFMLRG 94
                         799******.7*********44.....34***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.11E-2744101No hitNo description
Gene3DG3DSA:3.30.730.101.7E-2445101IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1845102IPR016177DNA-binding domain
PfamPF008475.1E-144594IPR001471AP2/ERF domain
PROSITE profilePS5103219.69145102IPR001471AP2/ERF domain
SMARTSM003801.6E-2845108IPR001471AP2/ERF domain
PRINTSPR003672.1E-74657IPR001471AP2/ERF domain
PRINTSPR003672.1E-76884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGMVKKKGSS VEEDENQGAN ESVTPHKMVP PRSVALGGAG QVRKRYIGVR KRPSGRWVAE  60
IKDIRNSIRV WLGTYDTAEE AVRAYDEAAF MLRGSNTRRN FWPCAPDSPD CTSALSSRIS  120
GLLRAGFRER NMSPICSSSG YIPSHQQDNT VEVAESAPQG IEVKAGHTAL DTVFNKLEDC  180
TITEDCEIST SSYSLVSGEV AGLEAISNNR ETSQLSCHDT NWFASLYDDR ESGEASKAEE  240
ENLVYTRFAD FGFVDSIGSP FELPEEMSEP LEPPPPITNI MGPTTALSET INQMQYECKF  300
SATLYAYNGV SECLRLQVSG HSNEASSDQF PCNTNCYTTF QETLTGLEED GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1544101159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-26related to AP2 11