PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0107s0005.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 733aa MW: 81324 Da PI: 7.0077 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.2 | 1e-21 | 79 | 134 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k Kalax.0107s0005.2.p 79 RKKYHRHTAEQIREMEALFKESPHPDEKQRQDLSKQLGLSSRQVKFWFQNRRTQIK 134 7999************************************************9877 PP | |||||||
2 | START | 195.3 | 2.7e-61 | 250 | 474 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv........dsgealrasgvvdmvlallveellddkeqWdetla.. 77 +a+ a +el ++a++++p+Wv+s+ e++n+d++++ f ++ +ea+r++++v+++l++l ++++d +W+e ++ Kalax.0107s0005.2.p 250 IANHAVEELKQMATVGAPLWVQSVeagrEILNYDVYMKLFCKEMDtfsslrptEAIEASRDTRLVFADLPQLAQSFMDAD-KWKELFPtm 338 678899**********************************7755489*********************************.****99999 PP ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEEC CS START 78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepks 158 ka+t++ i++g ga+qlm+aelq+l+p+vp R+++f+R+++ql+a +w+ivdvSvd ++ +s + ++ ++pSg++ie++s Kalax.0107s0005.2.p 339 isKATTIDIIRNGegpsrnGAVQLMFAELQMLTPMVPsREVYFIRSCKQLSASQWAIVDVSVDKYMDNA-ESLFKKCSKRPSGCIIEDTS 427 99******************************************************************9.8******************* PP TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205 ngh+kv+wveh ++++ +h+++r +v+sg+a+ga++w+atlq qce Kalax.0107s0005.2.p 428 NGHCKVIWVEHLECQKIPVHNMYRTIVNSGQAFGASRWMATLQLQCE 474 **********************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 63 | 130 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.71E-20 | 65 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.107 | 76 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-16 | 78 | 140 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.7E-19 | 79 | 134 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.38E-17 | 83 | 134 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 37.664 | 240 | 478 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.61E-28 | 242 | 475 | No hit | No description |
CDD | cd08875 | 2.32E-100 | 244 | 474 | No hit | No description |
SMART | SM00234 | 3.2E-55 | 249 | 475 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-48 | 250 | 474 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.4E-4 | 357 | 474 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 4.6E-11 | 518 | 703 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MSLIAGQAGI FHRADPAPVV TATAKVVERH NGGVRREEAV EISSDNSGPS CRSRSDDDIG 60 FEGEGNDEDD VNEQRKKKRK KYHRHTAEQI REMEALFKES PHPDEKQRQD LSKQLGLSSR 120 QVKFWFQNRR TQIKAFQERH ENSLLKSEME KLREENKLMR ETIQKTCCPS CGISTSGKES 180 SSSTEEKYLR IENKRLKSEV ENLQSALSKY SGPGTDLPDS GHAEQEPKSS LGLSTSAEVL 240 GLQKSTIMNI ANHAVEELKQ MATVGAPLWV QSVEAGREIL NYDVYMKLFC KEMDTFSSLR 300 PTEAIEASRD TRLVFADLPQ LAQSFMDADK WKELFPTMIS KATTIDIIRN GEGPSRNGAV 360 QLMFAELQML TPMVPSREVY FIRSCKQLSA SQWAIVDVSV DKYMDNAESL FKKCSKRPSG 420 CIIEDTSNGH CKVIWVEHLE CQKIPVHNMY RTIVNSGQAF GASRWMATLQ LQCEHLVFLK 480 ATNVPTKEAN GIATAVGRKS TLTLARRMSS SFCRALGASS HHTWTKVAST TGDDIRVSSR 540 KNLHNPGEPH GQIVCAVSSV WIPVPPRELF DFIRDERHRH EWDMLSNGVP VQSITNLAKG 600 QDRGNSVTIQ ATESKDNPIW LLQDTCTNTF ESTIVYGLVD PTHMRSAVMN GCNSSNTAIL 660 PSGFSILSDG LESRPSVITS QPEDTNSGGS LLTMAIQALV NTSPTAEAVD SVSTLVSCAL 720 SKIRKCLQCE DI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 80 | QRKKKRKK |
2 | 74 | 80 | RKKKRKK |
3 | 76 | 80 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023875609.1 | 0.0 | homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A2N9FB88 | 0.0 | A0A2N9FB88_FAGSY; Uncharacterized protein | ||||
STRING | XP_009338062.1 | 0.0 | (Pyrus x bretschneideri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0107s0005.2.p |
Publications ? help Back to Top | |||
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