PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0106s0040.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 339aa    MW: 36985.3 Da    PI: 5.2073
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0106s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1796145154
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                          s y+GVr++k +g+W+AeIrd +     r  r++lg+f t+eeA +a+ a   ++e
  Kalax.0106s0040.1.p  96 SVYRGVRQRK-WGKWAAEIRDpF-----RsVRVWLGTFSTPEEASQAYQAKLHEYE 145
                          78*******9.**********66.....56******************99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-1696144IPR016177DNA-binding domain
PfamPF008479.1E-1196145IPR001471AP2/ERF domain
CDDcd000183.73E-2196137No hitNo description
PROSITE profilePS5103219.05897163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2197141IPR001471AP2/ERF domain
SMARTSM003809.0E-1697156IPR001471AP2/ERF domain
PRINTSPR003674.8E-1098109IPR001471AP2/ERF domain
PRINTSPR003674.8E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSVGGRSVRK VRVIYSDPYA TDSSSDEEDG PRGLVRVAEI RKRVVKEIII PVVGGKRDAV  60
GSGLEKNGSG VTDNRLHAEK KPRSVTQSMS KRPSASVYRG VRQRKWGKWA AEIRDPFRSV  120
RVWLGTFSTP EEASQAYQAK LHEYEALGAT VSPTPKKIKT GFNPSAKAKT SHDIGVRKKT  180
ISKTKKAVSV EMKDGSPLSR SYKRAVSEDA ESHASSSHMD DKDNENGGAA ATEVKQPQFL  240
PPPPEMDGLM SGSLDQEIGL GLEFDSFLID DEFSQLFDDF GRSDDALPGN ADGFGSFAAD  300
LLDFDYDVDL NFDGVELSMD LEKLELPCLE ESFNIACP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.25e-24ERF family protein