PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0105s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 204aa MW: 23243.1 Da PI: 9.2183 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.9 | 1.1e-18 | 3 | 50 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l++ ++ +G ++W++Ia+ g++R++k+c++rw +yl Kalax.0105s0017.1.p 3 KGAWTPEEDHILAETIAIHGAKRWRKIAAFAGLNRCGKSCRLRWMNYL 50 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.3e-16 | 56 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l Kalax.0105s0017.1.p 56 RGDISAQEEDLILRLHKLLGNR-WALIAGRLP-GRTDNEIKNYWNSHL 101 677799****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 27.524 | 1 | 54 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.98E-30 | 2 | 97 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-14 | 2 | 52 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.2E-18 | 3 | 50 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-24 | 4 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.33E-11 | 5 | 50 | No hit | No description |
SMART | SM00717 | 2.8E-15 | 55 | 103 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.59 | 55 | 105 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-14 | 56 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 58 | 105 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.61E-11 | 60 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSKGAWTPEE DHILAETIAI HGAKRWRKIA AFAGLNRCGK SCRLRWMNYL RPNIKRGDIS 60 AQEEDLILRL HKLLGNRWAL IAGRLPGRTD NEIKNYWNSH LSKRMRDANG QDPERRSRST 120 NVKNYEDSQG PSSSIARSNV KVNHHTNPSI IAQEADQPHK KLIENNKNEM MANSFGASEF 180 EFLSEGFFEV DWISSFLEFD GCS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-27 | 1 | 105 | 5 | 108 | B-MYB |
1h8a_C | 5e-27 | 1 | 105 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007216465.2 | 4e-69 | transcription factor WER isoform X1 | ||||
Refseq | XP_020416417.1 | 1e-69 | transcription factor MYB114 isoform X2 | ||||
Refseq | XP_021800600.1 | 5e-69 | transcription factor WER-like | ||||
TrEMBL | A0A314UT62 | 8e-69 | A0A314UT62_PRUYE; Transcription factor MYB114-like | ||||
STRING | EMJ17664 | 4e-69 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 8e-52 | myb domain protein 66 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0105s0017.1.p |