PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0104s0004.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 737aa    MW: 82864.6 Da    PI: 6.3913
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0104s0004.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.82.1e-1143627331374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL+ cA+av+++d++   +lL+++++++s++gd mqR+a+yf+++L+arla+s++  y+++  ++ s    +++l+a++++  +sP+
  Kalax.0104s0004.2.p 362 LRTLLTLCAQAVAANDQRGSMELLKQIRQHSSETGDGMQRMAHYFANGLEARLAGSGTPFYRTMLHRNRS---AADVLKAYHMYLAISPF 448
                          5789**********************************************************99999998...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+s++ aN++I++ +e+++++HiiDf+i+ G+QWp+L+q L++Rp+gpp++ iTg++ p++g   ++++ etg+rLa++Ae+++vpfe+
  Kalax.0104s0004.2.p 449 RKMSNFFANKTIMQVAENKTKLHIIDFGIQFGFQWPCLIQRLSARPGGPPKIHITGIDFPQPGfrPADKVDETGRRLANYAESFDVPFEY 538
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          n  +ak++e++++++L+++ +E+l+Vn+ +++ ++ldesv+++s+r++v+kl+++++P+++++   +  +n++ F  rf e++ +ys+l+
  Kalax.0104s0004.2.p 539 NG-IAKEWETITTDDLKLRDDEVLVVNCLFNMRNVLDESVKVDSPRNAVMKLIRKTNPTIFIHGVVNGTYNAPFFISRFRESVFHYSSLY 627
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+le+++pr+  er  +E+e++gre++nvvaceg+er+er et ++W+ r  +aGF p+pl+e+++  ak  ++ ++ + +++ e+ ++l
  Kalax.0104s0004.2.p 628 DMLETNIPRDIPERLLIEKEIFGRELMNVVACEGSERTERPETCKQWQVRTLRAGFIPLPLNEEIMRLAKERVKSCYHKDFMIGEDGNWL 717
                          *****************************************************************************889********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+r  + +S+Wr
  Kalax.0104s0004.2.p 718 IQGWKGRIAYGLSSWR 733
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.712336713IPR005202Transcription factor GRAS
PfamPF035147.4E-112362733IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MVMDQGVTGC FDSMKGLDMN ELIKALPDQS LLYGINSHSN AFPVAPDSRN SGSETKMGFQ  60
AGVECQEDCD FSDIVLKYIS QILMEENLEE KKYLEEQESA ALLAAEKSLY EAIGKTHPTA  120
LEHVLTQTAD TNVGESSNSN TTSGVFDYSS CSSGSPVEPL EQILNFEVAE CQHLSSTSVS  180
SSQSSFNSYS STGYVGNRLA VSPINTLVEH HMLDEQSTRR FAKGVMGTNK SFPTEDHSFS  240
SCLYNESLLK SSKDVMIKDE EKNEHGYSAH GRKSRKSSHP KDDFMDEERN NKMSATYNET  300
VLRTEMFDMV LLNCGTEAAE RESALREALL NEANKNGQQN VQAKGAKGRG KKSKSKRELV  360
DLRTLLTLCA QAVAANDQRG SMELLKQIRQ HSSETGDGMQ RMAHYFANGL EARLAGSGTP  420
FYRTMLHRNR SAADVLKAYH MYLAISPFRK MSNFFANKTI MQVAENKTKL HIIDFGIQFG  480
FQWPCLIQRL SARPGGPPKI HITGIDFPQP GFRPADKVDE TGRRLANYAE SFDVPFEYNG  540
IAKEWETITT DDLKLRDDEV LVVNCLFNMR NVLDESVKVD SPRNAVMKLI RKTNPTIFIH  600
GVVNGTYNAP FFISRFRESV FHYSSLYDML ETNIPRDIPE RLLIEKEIFG RELMNVVACE  660
GSERTERPET CKQWQVRTLR AGFIPLPLNE EIMRLAKERV KSCYHKDFMI GEDGNWLIQG  720
WKGRIAYGLS SWRPAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-483627335375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017223003.10.0PREDICTED: scarecrow-like protein 9
TrEMBLA0A2P5B7K40.0A0A2P5B7K4_PARAD; GRAS transcription factor
STRINGXP_006486464.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-176SCARECROW-like 14