PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0103s0093.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 432aa    MW: 48511.9 Da    PI: 7.6714
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0103s0093.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.13.3e-1680138255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa a++ a++k++g
  Kalax.0103s0093.1.p  80 TFRGVTRHRWTGRYEAHLWDkNCWNQsqnKKgKQVYLGAYDDEEAAAHAYDLAALKYWG 138
                          69******************999977766447*************************98 PP
2AP249.88.7e-16181232155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa a++ a+ +++g
  Kalax.0103s0093.1.p 181 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAATAYDMAAIEYRG 232
                          89****99**********988422...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-1779148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-1680147IPR001471AP2/ERF domain
SMARTSM003806.1E-2580152IPR001471AP2/ERF domain
PROSITE profilePS5103219.80980146IPR001471AP2/ERF domain
PfamPF008472.2E-1181138IPR001471AP2/ERF domain
PRINTSPR003671.8E-58192IPR001471AP2/ERF domain
PfamPF008473.2E-11181232IPR001471AP2/ERF domain
CDDcd000186.20E-23181242No hitNo description
SuperFamilySSF541711.18E-17181242IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-18182241IPR001471AP2/ERF domain
SMARTSM003802.1E-26182246IPR001471AP2/ERF domain
PROSITE profilePS5103218.321182240IPR001471AP2/ERF domain
PRINTSPR003671.8E-5222242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MARLAHPKQT TRTNKDQLEE HDKAKKKKSK IEEDTTDIIC GDKLINIVAL KVDATDTKKK  60
QTKRSRKAVT REAPPQRTST FRGVTRHRWT GRYEAHLWDK NCWNQSQNKK GKQVYLGAYD  120
DEEAAAHAYD LAALKYWGPQ SILNFPLSTY KEELKGMEDQ SREEYIGSLR RKSSGFSRGV  180
SKYRGVARHH HNGRWEARIG RVLGNKYLYL GTFATQEEAA TAYDMAAIEY RGLNAVTNFD  240
LSRYTKWLSC SRRELNAQKS EGCLMSPKQL GRHQAAVSSL ITFPAATPPE NYTSEDADEA  300
APIRHGRDTV AAHSSVLGMF NEVLGRATLN SMEEEIESYP TYSNTTTTSA TATLSSGDDD  360
DSKSSFIMTN KRFFPDDIQT FFECTQQESG TSMFAAATDL FHSGSEDLIF GEAELNSFTS  420
SLFNFDQLHG S*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-130AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-130AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN45e-94AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D2Q6I21e-124A0A0D2Q6I2_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JJ901e-124A0A1U8JJ90_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
TrEMBLA0A251RVZ71e-124A0A251RVZ7_HELAN; Putative ARIA-interacting double AP2 domain protein
STRINGGorai.009G008800.11e-124(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-90ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]