PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0103s0073.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

bHLH

Protein Properties

Length: 355aa MW: 37955.1 Da PI: 6.1295

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0103s0073.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.6	7.2e-16	173	219	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L++l+P++ K +Ka++L +A+eY+k+Lq Kalax.0103s0073.1.p 173 VHNLSEKRRRSRINEKLKALQKLIPNS-----NKSDKASMLDEAIEYLKQLQ 219 6***********************7.....59***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	3.3E-19	166	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.15E-20	166	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.708	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.22E-18	172	223	No hit	No description
Pfam	PF00010	1.8E-13	173	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-17	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MADLYGTNAY SPTPSSSSAS LPLESEDLST FLQHLLHPSS TSSSCMPFRG KPVSFGSVPE 60 GVTAAGLHNS MDAERDGVGR MGIGPSTFVA PSLEINFAEP GGYFATGVDD VSRKGFSFVG 120 GLTIGDQVDK EFRLEKDSNE FTFENEGGAG ASEVPTNPLK SRSSSKRSRA AEVHNLSEKR 180 RRSRINEKLK ALQKLIPNSN KSDKASMLDE AIEYLKQLQL QVQMLSMRNG VSLHPLCIPG 240 VAQPLHMSHE GTSYGGGHNM LGGANDMLNS ISPTGNFSLN QEASVPPPFE VSNHGNSSNQ 300 PVRPTLNSIP NSEIAFGFDP TLEAHYKSFN FCSQSKDPKT DGTLHLESSN TSQG*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MADLYGTNAY SPTPSSSSAS LPLESEDLST FLQHLLHPSS TSSSCMPFRG KPVSFGSVPE  60
GVTAAGLHNS MDAERDGVGR MGIGPSTFVA PSLEINFAEP GGYFATGVDD VSRKGFSFVG  120
GLTIGDQVDK EFRLEKDSNE FTFENEGGAG ASEVPTNPLK SRSSSKRSRA AEVHNLSEKR  180
RRSRINEKLK ALQKLIPNSN KSDKASMLDE AIEYLKQLQL QVQMLSMRNG VSLHPLCIPG  240
VAQPLHMSHE GTSYGGGHNM LGGANDMLNS ISPTGNFSLN QEASVPPPFE VSNHGNSSNQ  300
PVRPTLNSIP NSEIAFGFDP TLEAHYKSFN FCSQSKDPKT DGTLHLESSN TSQG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	1e-39	bHLH family protein

Link Out ? help Back to Top
Phytozome	Kalax.0103s0073.1.p