PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0102s0101.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 261aa    MW: 28843.6 Da    PI: 8.2496
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0102s0101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.64.6e-15200236135
                 GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C++Cg  +  Tp++R gp g+k+LCnaCGly++ +g+
  Kalax.0102s0101.1.p 200 CTHCGIGSnsTPMMRIGPAGPKSLCNACGLYWKNTGR 236
                          ****865556***********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132010.46566101IPR010399Tify domain
PfamPF062006.2E-56991IPR010399Tify domain
PROSITE profilePS5101712.312133175IPR010402CCT domain
PfamPF062035.4E-14133175IPR010402CCT domain
SuperFamilySSF577162.33E-10200245No hitNo description
CDDcd002022.70E-12200245No hitNo description
Gene3DG3DSA:3.30.50.103.3E-14200241IPR013088Zinc finger, NHR/GATA-type
PfamPF003205.9E-13200236IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-9200247IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.302200250IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMCGQFAKTD PVEEECGLEP LKDSDLDLDL ELELAYELNA LDDDDGDKSG PSSGVTVAEE  60
IRTPQSSEDS AQLFISYAGQ AYVFDSVASE QFKDALYVLG MRGAWVGDRD AIKSCQSRMR  120
KGELPGRCSQ LQRLASLKRF RQKKMKRCFE KKIRYHVRQK VALRLPRSKG QFFSEKTVDC  180
GGNNTKDSGP SNSLRYLNGC THCGIGSNST PMMRIGPAGP KSLCNACGLY WKNTGRLRDL  240
SSRSKASSHD LPEVGHFLYS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006580988.13e-55uncharacterized protein LOC100784789 isoform X1
RefseqXP_015935014.13e-55GATA transcription factor 25
RefseqXP_016163727.13e-55GATA transcription factor 25
RefseqXP_025613243.13e-55GATA transcription factor 25
RefseqXP_025666691.13e-55GATA transcription factor 25
TrEMBLA0A445BTU36e-54A0A445BTU3_ARAHY; Uncharacterized protein
TrEMBLA0A445C9347e-54A0A445C934_ARAHY; Uncharacterized protein
TrEMBLI1K9S57e-54I1K9S5_SOYBN; Uncharacterized protein
STRINGGLYMA06G10280.11e-54(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-49GATA-type zinc finger protein with TIFY domain