PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0101s0050.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CO-like | ||||||||
Protein Properties | Length: 397aa MW: 44102.7 Da PI: 7.7563 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.9 | 1.1e-09 | 14 | 57 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C ++ H+ H++v Kalax.0101s0050.2.p 14 ARACDSCVKKRARWYCAADDAFLCQSCDSSVHSAnslarrHERV 57 578*****************************657788888876 PP | |||||||
2 | CCT | 68.4 | 1.9e-23 | 341 | 384 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ Kalax.0101s0050.2.p 341 REARVSRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 384 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.3E-10 | 12 | 59 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.163 | 12 | 59 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.7E-8 | 14 | 57 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.67E-10 | 15 | 59 | No hit | No description |
Pfam | PF06203 | 3.4E-18 | 341 | 383 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.934 | 341 | 383 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MMKKMASAVG GKTARACDSC VKKRARWYCA ADDAFLCQSC DSSVHSANSL ARRHERVRLK 60 TASSFKLSAS DDFMASKSVP SWQRDVTRKP RTPRGKQSTP KSEYGSNPNP FSLVPELGVD 120 ETASVCESEE QLVYSRVPVY DPFVAELCTS ANSNEEGKFD RSLQSDEGNN SSVSDPPKTC 180 DVEKFNGFLP SEMDLEEFAA DVESLLGKGL ENEPCGMEGL GLVEIVKEER STERDALELV 240 SFDYGCSANR FEDEAEDEDG ERKQTMKMVT TTMKLLRLDY EGVITAWAGQ RCPWAGGCRP 300 NMDPTHFWPS CMGGCRIEGH HPDAGRVPGM GHGGTLGDAE REARVSRYKE KRRTRLFSKK 360 IRYEVRKLNA EKRPRMKGRF VKRSALGVAP NTSLIR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 351 | 367 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002282578.1 | 1e-133 | PREDICTED: zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | D7T949 | 1e-131 | D7T949_VITVI; Uncharacterized protein | ||||
STRING | VIT_01s0011g03520.t01 | 1e-132 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68520.1 | 1e-100 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0101s0050.2.p |