PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0100s0084.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 545aa    MW: 60058.6 Da    PI: 5.117
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0100s0084.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-173683148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT  Ed +l d+vk++G g+W+++ ++ g+ R++k+c++rw ++l
  Kalax.0100s0084.2.p 36 KGPWTSAEDAILMDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 83
                         79******************************************9986 PP
2Myb_DNA-binding51.81.9e-1689132146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++
  Kalax.0100s0084.2.p  89 KGAFTAEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 132
                          799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.733183IPR017930Myb domain
SMARTSM007173.4E-143585IPR001005SANT/Myb domain
SuperFamilySSF466893.52E-3035130IPR009057Homeodomain-like
PfamPF002497.4E-153683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-243791IPR009057Homeodomain-like
CDDcd001675.51E-113883No hitNo description
PROSITE profilePS5129426.4284138IPR017930Myb domain
SMARTSM007173.8E-1788136IPR001005SANT/Myb domain
PfamPF002491.9E-1589132IPR001005SANT/Myb domain
CDDcd001671.34E-1291132No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2592137IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSIDTEDGPL SNEELESQLT GDESSRGITS GIVLKKGPWT SAEDAILMDY VKKHGEGNWN  60
AVQKHSGLFR CGKSCRLRWA NHLRPNLKKG AFTAEEERLI IELHAKMGNK WARMAAHLPG  120
RTDNEIKNYW NTRIKRRQRA GLPLYPPEAC LQALLESQSE DPSRVNSRGT GYNETNMYNI  180
SDVMFRSMSA AHGSLPYFPE PAGMSSDNVL LEALAFTRRT NFTSSQPPKR SCGLRSHVRG  240
SDVIVKKELR SFEPVQDDPK VNQSLELFFP DDRDNHLSLG ETQDSHSFVN GNFSTPKPAC  300
EAVKSELPSF QYPDTYSSNW DASYSASPLL DPIDSNIHGE TPNGTVHSEC SSPRNSGLLD  360
ALLYEARAIS GVKNQLSKKS SHSSAVTLSE SAGESGPKFC ETEIGNYSEP MSPFGSTTSI  420
YGGSELTAAN GTLLDSHPFK ETYFGCKLKS EPADNVSNPV EENSPNRLDF SEPGLPFYSD  480
WLEQESGFIM EEASLEEAAG EAFVGNDSIN DFRYMGSALT GQGWGNCSYV WKSMPTVRQV  540
CKFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-32341375107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00348DAPTransfer from AT3G11440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024458415.11e-171transcription factor MYB33 isoform X3
TrEMBLA0A1R3FUA91e-170A0A1R3FUA9_COCAP; Uncharacterized protein
STRINGPOPTR_0001s07330.11e-169(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.11e-102myb domain protein 65