PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0100s0084.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 545aa MW: 60058.6 Da PI: 5.117 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.4 | 5.9e-17 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +l d+vk++G g+W+++ ++ g+ R++k+c++rw ++l Kalax.0100s0084.1.p 36 KGPWTSAEDAILMDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 83 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.8 | 1.9e-16 | 89 | 132 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++ Kalax.0100s0084.1.p 89 KGAFTAEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 132 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.73 | 31 | 83 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-14 | 35 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.52E-30 | 35 | 130 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.4E-15 | 36 | 83 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-24 | 37 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.51E-11 | 38 | 83 | No hit | No description |
PROSITE profile | PS51294 | 26.42 | 84 | 138 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-17 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-15 | 89 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.34E-12 | 91 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-25 | 92 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 545 aa Download sequence Send to blast |
MSIDTEDGPL SNEELESQLT GDESSRGITS GIVLKKGPWT SAEDAILMDY VKKHGEGNWN 60 AVQKHSGLFR CGKSCRLRWA NHLRPNLKKG AFTAEEERLI IELHAKMGNK WARMAAHLPG 120 RTDNEIKNYW NTRIKRRQRA GLPLYPPEAC LQALLESQSE DPSRVNSRGT GYNETNMYNI 180 SDVMFRSMSA AHGSLPYFPE PAGMSSDNVL LEALAFTRRT NFTSSQPPKR SCGLRSHVRG 240 SDVIVKKELR SFEPVQDDPK VNQSLELFFP DDRDNHLSLG ETQDSHSFVN GNFSTPKPAC 300 EAVKSELPSF QYPDTYSSNW DASYSASPLL DPIDSNIHGE TPNGTVHSEC SSPRNSGLLD 360 ALLYEARAIS GVKNQLSKKS SHSSAVTLSE SAGESGPKFC ETEIGNYSEP MSPFGSTTSI 420 YGGSELTAAN GTLLDSHPFK ETYFGCKLKS EPADNVSNPV EENSPNRLDF SEPGLPFYSD 480 WLEQESGFIM EEASLEEAAG EAFVGNDSIN DFRYMGSALT GQGWGNCSYV WKSMPTVRQV 540 CKFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-32 | 34 | 137 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024458415.1 | 1e-171 | transcription factor MYB33 isoform X3 | ||||
TrEMBL | A0A1R3FUA9 | 1e-170 | A0A1R3FUA9_COCAP; Uncharacterized protein | ||||
STRING | POPTR_0001s07330.1 | 1e-169 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-102 | myb domain protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0100s0084.1.p |