PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0100s0053.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family Trihelix
Protein Properties Length: 490aa    MW: 52376.9 Da    PI: 7.4975
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0100s0053.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.33.1e-16100185186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W++  +  L++++ ++ ++l+rg+l++ +We v++ + e++   +s +qCk+k++nl+kr+k + ++ +++  +++s++ +f+++e
  Kalax.0100s0053.1.p 100 EWSDAAISSLLDVYIDKYTQLNRGNLRGRDWEVVAEMVNEKQKsCKSVEQCKNKIDNLKKRFKVEVQRISSG-GTAVSSWHWFKKME 185
                          5*************************************77665268*******************9999998.566679*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1898187No hitNo description
Gene3DG3DSA:3.40.1160.101.7E-67242482IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.59E-55249482IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.577249483IPR015963Uridylate kinase, bacteria
PfamPF006968.0E-26252462IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042545.06E-111252483No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MASCNDGFSP FADDDVHHHH HQQRFSSHHI SADHDPSPNK VSAAGESDAD SGYPGGDESD  60
QIRDSSGGRG PYYYKKLKPT LLNGAGSESA CVDYRKDREE WSDAAISSLL DVYIDKYTQL  120
NRGNLRGRDW EVVAEMVNEK QKSCKSVEQC KNKIDNLKKR FKVEVQRISS GGTAVSSWHW  180
FKKMEEIVGN SPSVTKCTPE DDRTGIVAAS AAAVVGNGIA SSSSFTSRHA KRYSPSPATL  240
NNLKPKPAPK WKRVVFKISG GALVGSGQNI DPKIAMQIAN EVATACQLGV EVAIVTGGSN  300
FFCGTSWVSD TGFDRPTAYQ IGMMATVMNS ILLQSALEKS GVQARVQTAF ALPEVAEPYS  360
KQRAIRHLEK GRVVIFGGIG AGTGNPLFST DTAAALRATE INADAVLKGT NVDGVYDCRS  420
GDAGGILVRS SYREIISGGV APMDLMAITF CEESGTPVVI FNMLEPGNIT KALCGNRVGT  480
LIDIGGRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-6123548234279Uridylate kinase
3nwy_B2e-6123548234279Uridylate kinase
3nwy_C2e-6123548234279Uridylate kinase
3nwy_D2e-6123548234279Uridylate kinase
3nwy_E2e-6123548234279Uridylate kinase
3nwy_F2e-6123548234279Uridylate kinase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002268973.10.0PREDICTED: uncharacterized protein LOC100260933
TrEMBLF6I5U80.0F6I5U8_VITVI; Uncharacterized protein
STRINGVIT_13s0074g00240.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-166Trihelix family protein