PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0100s0030.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 231aa MW: 26399.7 Da PI: 6.5953

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0100s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.1e-17	5	50	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd ll+++v+q G g W++++ g++R++k+c++rw++yl Kalax.0100s0030.1.p 5 AWTEEEDHLLKKCVEQCGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50 7*******************************************97 PP
2	Myb_DNA-binding	52.1	1.5e-16	56	100	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg +T eE +l++++++ lG++ W++Ia++++ gRt++++k++w+ + Kalax.0100s0030.1.p 56 RGTFTDEEVLLIIKLHNNLGNR-WSLIASRLP-GRTANDVKNYWNCH 100 899*****************.*****.*********977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.958	1	50	IPR017930	Myb domain
SMART	SM00717	1.7E-12	2	52	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-15	5	50	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.54E-27	5	97	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-20	5	57	IPR009057	Homeodomain-like
CDD	cd00167	2.38E-9	5	50	No hit	No description
PROSITE profile	PS51294	24.709	51	105	IPR017930	Myb domain
SMART	SM00717	8.8E-16	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-15	56	98	IPR001005	SANT/Myb domain
CDD	cd00167	1.54E-10	58	101	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-24	58	106	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MGGVAWTEEE DHLLKKCVEQ CGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIRRGTFT 60 DEEVLLIIKL HNNLGNRWSL IASRLPGRTA NDVKNYWNCH LSKKLNKVHN KDDPTISPAV 120 TTSNQQVGRF TAHHQFQTLT SISGSSSTGP HEEQTSMIHL EDMYSLELKQ VGSNWKQIVC 180 GGEEEDGQNE VNKFAPEFEY EDTKIKAGGE IRSMDNNWGC WEDLIFDMEL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	4e-20	6	105	7	105	MYB PROTO-ONCOGENE PROTEIN
1mse_C	4e-20	6	105	7	105	C-Myb DNA-Binding Domain
1msf_C	4e-20	6	105	7	105	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017416639.1	8e-71	PREDICTED: transcription factor MYB113-like
TrEMBL	A0A0L9U5Q7	2e-69	A0A0L9U5Q7_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RVG8	2e-69	A0A0S3RVG8_PHAAN; Uncharacterized protein
STRING	XP_007140451.1	1e-69	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	2e-50	myb domain protein 113

Link Out ? help Back to Top
Phytozome	Kalax.0100s0030.1.p