PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0099s0089.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | SBP | ||||||||
Protein Properties | Length: 255aa MW: 28174.1 Da PI: 9.2593 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 132.9 | 1.1e-41 | 140 | 216 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cq egC+adls+ak+yhrrhkvCe+hska++v++ gl+qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrrk+ Kalax.0099s0089.1.p 140 RCQTEGCTADLSNAKQYHRRHKVCEFHSKAATVITGGLTQRFCQQCSRFHLLTEFDNGKRSCRRRLAEHNRRRRKTP 216 6*************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 4.6E-35 | 133 | 202 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.565 | 138 | 215 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.44E-38 | 139 | 217 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.1E-31 | 141 | 214 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MLEYELWGTP SQMTLANSGH DPPAVASHHG VETFSTNASS SHPQSHNSAL PLDYAHQNAA 60 FWSSPNPYTF SYAPLHNQNA AFYSSANPNF FLKTEEGSLG TRLGLNLGRR TYFSAQDDGF 120 VSRLYHRGGL GGSGSVSAPR CQTEGCTADL SNAKQYHRRH KVCEFHSKAA TVITGGLTQR 180 FCQQCSRFHL LTEFDNGKRS CRRRLAEHNR RRRKTPRQPS SQGQLELQKS HMDNSSSETL 240 AKCLPESSAM THPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-33 | 131 | 214 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021612203.1 | 3e-71 | squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 7e-60 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A2C9VVM1 | 7e-70 | A0A2C9VVM1_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023056m | 1e-70 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 3e-46 | squamosa promoter binding protein-like 8 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0099s0089.1.p |
Publications ? help Back to Top | |||
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