PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0098s0038.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 462aa    MW: 51288.5 Da    PI: 6.1951
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0098s0038.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS310.15.2e-95594572373
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl..fsevs 88 
                          ++lL++cA+a++++d++laq++L+ l+++a+ dgd++qRl+  f++AL +r ar  ++ +k+l++  +++ +  ++++++ +l  f++++
  Kalax.0098s0038.1.p  59 EQLLVHCATALETNDATLAQQILWVLNNIAAADGDSNQRLTCGFLRALVSRAAR--TGSCKILTAAINTTASlAVHKFSVIELasFVDLT 146
                          79****************************************************..44444443333332222566666666677***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvp 175
                          P+++f++ +aN aIl+a+eg + vHi+D+++++++Q p+L++aLa+R e+pp l++T+ g+ e +    + ++ee+g++L +fA++ +++
  Kalax.0098s0038.1.p 147 PWHRFGFTAANTAILDAIEGYSSVHIVDLSLTHCMQIPTLIDALATRLESPPLLKLTVAGATEDVppmLELSYEELGSKLMNFARSRNIT 236
                          *************************************************************887798889999***************** PP

                 GRAS 176 fefnvl.......vakrledleleeLrvkp.gEalaVnlvlqlhrll.................desvsleserdevLklvkslsPkvvv 240
                          +ef+vl        a+ +++++ ++L  ++ gEal++n++++lh+++                 + s ++ s+r+ +Lk +++l P++v+
  Kalax.0098s0038.1.p 237 MEFRVLpssssdgFASLIDQIREHNLVHSQiGEALIINCHMMLHYIPeetlsmghtsdspspnlSTSPQTFSYRNFFLKKIRTLDPTLVI 326
                          ******8876555555566666666655559******************************99977777778899*************** PP

                 GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                          +v+++ad +s ++++r+ +a++y +  +d++++ l++ s++r+++E+  + ++i+nv+a eg++r+er e +++W +r++++GF+ ++++
  Kalax.0098s0038.1.p 327 LVDEDADFTSRNLVTRLRSAFNYLWIPYDTVDTFLAKGSKQRQWYEAD-ICWKIENVIAEEGTRRVERPEPKGRWVQRMRSSGFRDISFG 415
                          ************************************************.***************************************** PP

                 GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                          e+aa+++k++l +++  g+ +++e+++lvl+Wk++++v++SaW
  Kalax.0098s0038.1.p 416 EEAASEVKTMLDEHA-AGWGLKKEDDELVLTWKGHNVVFASAW 457
                          ***************.99************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.21332439IPR005202Transcription factor GRAS
Gene3DG3DSA:1.25.10.101.4E-454133IPR011989Armadillo-like helical
PfamPF035141.8E-9259457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MMQFTESPTL HHHHQMMPLS SNPSMLNKLS NSVRPWPVGF PSSTKPIAGG GLGDANCMEQ  60
LLVHCATALE TNDATLAQQI LWVLNNIAAA DGDSNQRLTC GFLRALVSRA ARTGSCKILT  120
AAINTTASLA VHKFSVIELA SFVDLTPWHR FGFTAANTAI LDAIEGYSSV HIVDLSLTHC  180
MQIPTLIDAL ATRLESPPLL KLTVAGATED VPPMLELSYE ELGSKLMNFA RSRNITMEFR  240
VLPSSSSDGF ASLIDQIREH NLVHSQIGEA LIINCHMMLH YIPEETLSMG HTSDSPSPNL  300
STSPQTFSYR NFFLKKIRTL DPTLVILVDE DADFTSRNLV TRLRSAFNYL WIPYDTVDTF  360
LAKGSKQRQW YEADICWKIE NVIAEEGTRR VERPEPKGRW VQRMRSSGFR DISFGEEAAS  420
EVKTMLDEHA AGWGLKKEDD ELVLTWKGHN VVFASAWVPS I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-453746066475Protein SHORT-ROOT
5b3h_B1e-453746012421Protein SHORT-ROOT
5b3h_E1e-453746012421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002279517.30.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-180SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A438KQL40.0A0A438KQL4_VITVI; Scarecrow-like protein 32
TrEMBLA5ANJ00.0A5ANJ0_VITVI; Uncharacterized protein
STRINGVIT_07s0129g00340.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein