PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0097s0074.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 362aa    MW: 40447.3 Da    PI: 4.7811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0097s0074.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-19119169155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIrdp     r  r +lg+f taeeAa  +++a+ kl+g
  Kalax.0097s0074.1.p 119 KKFRGVRRRP-WGKWAAEIRDPA----RrVRLWLGTFETAEEAAMVYDNAAIKLRG 169
                          59********.**********82....35*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.71E-33119176No hitNo description
Gene3DG3DSA:3.30.730.101.4E-29120176IPR001471AP2/ERF domain
PfamPF008474.3E-12120169IPR001471AP2/ERF domain
SMARTSM003809.7E-38120183IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21120176IPR016177DNA-binding domain
PROSITE profilePS5103223.947120177IPR001471AP2/ERF domain
PRINTSPR003673.3E-10121132IPR001471AP2/ERF domain
PRINTSPR003673.3E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MEVSMYNPVK YSEHRRSFTA KRKQVKPAQK HGSCKLVRIS YTDPDATDSS SGEDEPIFFP  60
RRRVRKYVDE ISILPGCEET KKEKPCSRLM MCGRKRAAAE TGDVHVKVVN NGCSAGGVKK  120
FRGVRRRPWG KWAAEIRDPA RRVRLWLGTF ETAEEAAMVY DNAAIKLRGP DALTNFITPP  180
PPPLPLLLDG DDESQQQTRQ QPDVKVTAAS TSSGSYDSGE ESHALSSPTS VLHYRPKEME  240
IVFKDPILEH PDEPIWVESQ CSQQSVLNRL LSTDSNTHDD TATDGVAEFL PLDLDGSFFN  300
FEPPPPLFDF SSDMFDSATT FVASPTDMLD LAASDFSMHN QEDDYFQDID DLFLSDPLMA  360
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-21119176462ATERF1
3gcc_A3e-21119176462ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.18e-51cytokinin response factor 4