PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0096s0058.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 447aa    MW: 49126.1 Da    PI: 4.6775
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0096s0058.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-173178148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+ Ed +l d+v+++G g+W+++ +  g++R++k+c++rw ++l
  Kalax.0096s0058.1.p 31 KGQWTPAEDAILRDYVEKHGEGNWNAVQKFSGLTRCGKSCRLRWANHL 78
                         799*****************************************9986 PP
2Myb_DNA-binding50.83.9e-1684127146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++T+eE el ++++++lG++ W++ a++++ gRt++++k++w++
  Kalax.0096s0058.1.p  84 RGAFTPEEVELVIKLHAKLGNK-WAKMAAELP-GRTDNEIKNFWNT 127
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4722678IPR017930Myb domain
SuperFamilySSF466895.24E-2930125IPR009057Homeodomain-like
SMARTSM007173.8E-143080IPR001005SANT/Myb domain
PfamPF002496.8E-163178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-233285IPR009057Homeodomain-like
CDDcd001676.46E-123478No hitNo description
PROSITE profilePS5129424.92279133IPR017930Myb domain
SMARTSM007176.4E-1683131IPR001005SANT/Myb domain
PfamPF002497.1E-1584127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2486131IPR009057Homeodomain-like
CDDcd001675.36E-1286127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MEWNVTDEIL ESPSGEDLAS GEGKSSGILT KGQWTPAEDA ILRDYVEKHG EGNWNAVQKF  60
SGLTRCGKSC RLRWANHLKP NLKRGAFTPE EVELVIKLHA KLGNKWAKMA AELPGRTDNE  120
IKNFWNTRIK RHQRSGLPIY PPEVCLKLAE ESQQSPHSAT FSIDLPSSHH FMEPSDFMIP  180
EFKIERPLNP SLFLDIPTSK EPPLGLGLVN TPNGLCDTAS RSLFENQIIH AHHLPELYSS  240
NSPLLCIPLG SHALTNGNLP TSAPGFGSVK LELPSLQSSE SDFIFWGAPA SPRPSFATKD  300
SVAPSPQVGP DLLQPAPDTD GLLESVVCPP NRLKTSNLDD LSLDPEWWEV LCDQPVTPMG  360
PSANGNSTDE LLSVDVILGN EGKISDADPK QHLTSSNLNE IRDSCEWDPW RPDTWFNAAL  420
LSPDTEHARE YQRLQETISA ICGDDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-25281311103C-Myb DNA-Binding Domain
1msf_C4e-25281311103C-Myb DNA-Binding Domain
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021677407.14e-88transcription factor GAMYB-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11440.16e-70myb domain protein 65