PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0095s0057.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 334aa    MW: 35630 Da    PI: 7.1052
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0095s0057.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.15.8e-19252286135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Kalax.0095s0057.1.p 252 CSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRL 286
                          *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.3E-783326IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.662246282IPR000679Zinc finger, GATA-type
SMARTSM004012.0E-16246300IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-14247308No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14250284IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.62E-13251299No hitNo description
PROSITE patternPS003440252277IPR000679Zinc finger, GATA-type
PfamPF003208.1E-17252286IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MECVESALKG SFRKEMTLKL NHQAVIDDLP AAGLTSLTAD DFFVDDLLDF SEINAPDEEE  60
NEVVVVVDEK DETAKTCLGG LPGGEFGKGK AEACRNLVFK EGELSVPADD VADLEWLSHF  120
VDDSFPGYSL TCPAAPLPAK SCAQPPAPAP PVEASVKPTR ARSKRARNGV LGWSVSGSET  180
SSSTSSSSST SFSSSTTWLI YTNQPSHVDA VLESSAKRAT PRLTSAVKKR KTRPPREAAG  240
GNGGPSAQPR RCSHCGVQKT PQWRAGPLGA KTLCNACGVR FKSGRLLPEY RPACSPTFSS  300
ELHSNHHRKV LEMRYKKELE LPDAGSAPAV PSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023749186.14e-85GATA transcription factor 6-like
TrEMBLA0A2J6M9E49e-84A0A2J6M9E4_LACSA; GATA transcription factor
STRINGVIT_04s0023g02880.t014e-83(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.28e-54GATA transcription factor 5