PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0095s0049.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | YABBY | ||||||||
Protein Properties | Length: 167aa MW: 18249.7 Da PI: 9.7166 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 182.1 | 3.2e-56 | 2 | 154 | 23 | 169 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....lleelkveeenlksnvekeesastsvssekl....sen 104 vsvP ts++++vtvrCGhC++llsvn+ q + +h+ ++ +++ l ++ +++ n++s ++++s+s+ ++ kl ++ Kalax.0095s0049.3.p 2 EVSVPCTSMLNIVTVRCGHCANLLSVNMGALLQPSSI-QHFPQKQQQTgaegALMTNATNNLNYSSGSSSSSSPSKCNPD-KLsgscLSS 89 69***********************999887755444.444433333311123333333333333333333333333333.335555456 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 e+++ pr ppv ekrqrvPsaynrfikeeiqrikasnP+ishreafsaaaknWahfP+ihfg Kalax.0095s0049.3.p 90 ENNQPPRLPPVRPAMEKRQRVPSAYNRFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFG 154 677889999976667*************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.1E-57 | 2 | 155 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-7 | 102 | 149 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 5.9E-5 | 108 | 163 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MEVSVPCTSM LNIVTVRCGH CANLLSVNMG ALLQPSSIQH FPQKQQQTGA EGALMTNATN 60 NLNYSSGSSS SSSPSKCNPD KLSGSCLSSE NNQPPRLPPV RPAMEKRQRV PSAYNRFIKE 120 EIQRIKASNP EISHREAFSA AAKNWAHFPH IHFGMKKAKF LDQDIN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012851072.1 | 1e-59 | PREDICTED: putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 5e-49 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A061GUT1 | 3e-55 | A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1 | ||||
STRING | Migut.D02379.1.p | 4e-59 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-50 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0095s0049.3.p |
Publications ? help Back to Top | |||
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