PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0094s0037.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 309aa MW: 34068.6 Da PI: 5.8267 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.3e-20 | 156 | 206 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdps++g +r++lg+f+ta +Aaka+++a+ kl+g Kalax.0094s0037.1.p 156 HYRGVRRRP-WGKFAAEIRDPSKRG--ARVWLGTFDTAIDAAKAYDRAAFKLRG 206 7********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 8.5E-32 | 155 | 215 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.44E-22 | 156 | 216 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.46 | 156 | 214 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 156 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.35E-31 | 156 | 214 | No hit | No description |
SMART | SM00380 | 1.3E-37 | 156 | 220 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 157 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-13 | 196 | 216 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MATPSEVSTL EQIKQHLFGG LLSPVNLKPL GSGSDSSESA VTTSTDSPVS FSNYGAFSKL 60 ESCRSFEFDH LPNEFFSFET KFETTEFDFA PKAEVIDRIE ISKKPQILTS KPSRKPSLNI 120 SLPSKTERLD LTQPPAAPAA VVVSMPEKAD LSDDRHYRGV RRRPWGKFAA EIRDPSKRGA 180 RVWLGTFDTA IDAAKAYDRA AFKLRGSKAI LNFPLEIAES CYAGAVAEVS DCGRKRRRQE 240 EGVEIEAKKV KAEEVVVEEE MAKPPLTPTS WTAFWDFDET EMRGIFNVPP LSPLSPHPAL 300 GFPQLSVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-31 | 155 | 217 | 4 | 66 | ATERF1 |
3gcc_A | 6e-31 | 155 | 217 | 4 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 237 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021639103.1 | 2e-71 | ethylene-responsive transcription factor 6-like | ||||
TrEMBL | A0A067L5Z5 | 4e-68 | A0A067L5Z5_JATCU; Uncharacterized protein | ||||
STRING | evm.model.supercontig_89.42 | 1e-68 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 2e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0094s0037.1.p |