PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0094s0017.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 141aa MW: 15158.7 Da PI: 8.4343 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 12 | 63 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrd n++ +r++lg+f+taeeAa+a+++a+ +++g+ Kalax.0094s0017.1.p 12 RYRGIRRRP-WGKFAAEIRDS--NNQGARIWLGTFDTAEEAARAYDRAAYNMRGA 63 69*******.**********4..2345*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.94E-19 | 12 | 71 | No hit | No description |
SuperFamily | SSF54171 | 3.99E-23 | 12 | 71 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.4E-34 | 12 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-15 | 12 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-31 | 12 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.683 | 12 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-12 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-12 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MGDKDSGGDG VRYRGIRRRP WGKFAAEIRD SNNQGARIWL GTFDTAEEAA RAYDRAAYNM 60 RGALAVLNFP EEYELTASRG SAGSNVQGSA GSSSTSRSGK EVIEFECLDN QVLEDMLDWG 120 NAAEGDGGSA KADKKKKKKK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-36 | 5 | 112 | 2 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 139 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023733438.1 | 7e-50 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 2e-38 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A2J6KGH7 | 2e-48 | A0A2J6KGH7_LACSA; Uncharacterized protein | ||||
STRING | GLYMA15G17090.1 | 2e-45 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04370.1 | 1e-24 | Ethylene-responsive element binding factor 14 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0094s0017.1.p |
Publications ? help Back to Top | |||
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