PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kalax.0093s0091.1.p

Organism

Kalanchoe marnieriana

Taxonomic ID

80907

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Protein Properties

Length: 908aa MW: 98821.2 Da PI: 5.7996

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kalax.0093s0091.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	61.3	1.6e-19	324	423	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+kvl+ sd+++ grlvlpk +ae++ +++ e++ ++++d +g++W++++++ +++s++yvl+ G ++ +L++gD+v+F++ Kalax.0093s0091.1.p 324 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQSEGTPIRIQDAKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVIFSR-- 410 99************************556667788***********99899999999.*******************4.. PP S.SEE..EEEEE- CS B3 87 r.sefelvvkvfr 98 r +++lv++ ++ Kalax.0093s0091.1.p 411 RdPGGKLVIGSRK 423 4499999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.4E-29	319	425	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-20	321	422	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.57E-23	322	419	No hit	No description
Pfam	PF02362	2.9E-16	324	423	IPR003340	B3 DNA binding domain
SMART	SM01019	2.3E-20	324	424	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.462	324	425	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	12.983	580	630	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.5E-8	585	627	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 908 aa Download sequence Send to blast
MGTAICMNKS CRTPSSPEWK SGWPLRSGGF ATLCLVCGSA FENLVYCETF HRDESGWREC 60 DSCKKPIHCG CASSKPFIEL LDLGGACCIT CAKTTGQPIR RDEVSNDHST QVLSSVGGLQ 120 PTLGEVRIKG DIAGKGKNLL LGKTKMGGDP DCLPQIPKGE ANLSLGAVNG EDVMQSFGDL 180 SSNFLNLNSQ SVGSSHPNVS LGIQDSYEAI PQTSLNIGLS ASSDPSNFSA KNSCGVVEGI 240 ELIKLPSPLQ QSQRSRVILP KLSKGGLSLS IDASKAVVQQ PRVARPPAEG RGRNQLLPRY 300 WPRITDQELQ QLSGDLNSPV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGTP 360 IRIQDAKGKE WTFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVIFSR RDPGGKLVIG 420 SRKASVSSDT PDGDIAALAN GAHGESSFSG VSAASGYSGT LQSAAENRDP RMLALSEQMT 480 LAHCNLGWSK SDRYRGRIIG TPLQPSMVNR PKNISLKSRR LLMHNEDVLE LKLTWDEAQD 540 LLRAPPSIKP SIVTVEDHEI EEFDEPPVLA KKTIFTVGPS GGQEQWAQCD LCSKWRRLPV 600 DVLLPLKWNC AENFWDSDRC LCSAPDEVGA KELENLLKSG KDLKRRRILE NHKMAPDREP 660 SGLDALASAA VLGDNAGESG DTSVGATTKH PRHRPGCTCI VCIQPPSGKG KHNPTCTCNV 720 CMTVKRRFKT LMLRKRIRQS EREAEIAQRD PVQPKENYVL TNVKGDYGHE TLQSLPVQTE 780 AEADRTGQNL VHVDQVSDNS DGQLDLNCHP DRSNECMEQE MSAAVSMTRL VHDAAHPMES 840 YLKQNGLANL TSDATVPPQT IEESEDGDAD EDEDDRVVES ESMAGPENKD DDRSGRFNQD 900 QDANQKL*

Sequence ? help Back to Top

Protein Sequence Length: 908 aa Download sequence Send to blast

MGTAICMNKS CRTPSSPEWK SGWPLRSGGF ATLCLVCGSA FENLVYCETF HRDESGWREC  60
DSCKKPIHCG CASSKPFIEL LDLGGACCIT CAKTTGQPIR RDEVSNDHST QVLSSVGGLQ  120
PTLGEVRIKG DIAGKGKNLL LGKTKMGGDP DCLPQIPKGE ANLSLGAVNG EDVMQSFGDL  180
SSNFLNLNSQ SVGSSHPNVS LGIQDSYEAI PQTSLNIGLS ASSDPSNFSA KNSCGVVEGI  240
ELIKLPSPLQ QSQRSRVILP KLSKGGLSLS IDASKAVVQQ PRVARPPAEG RGRNQLLPRY  300
WPRITDQELQ QLSGDLNSPV VPLFEKVLSA SDAGRIGRLV LPKACAEAYF PPISQSEGTP  360
IRIQDAKGKE WTFQFRFWPN NNSRMYVLEG VTPCIQSMQL QAGDTVIFSR RDPGGKLVIG  420
SRKASVSSDT PDGDIAALAN GAHGESSFSG VSAASGYSGT LQSAAENRDP RMLALSEQMT  480
LAHCNLGWSK SDRYRGRIIG TPLQPSMVNR PKNISLKSRR LLMHNEDVLE LKLTWDEAQD  540
LLRAPPSIKP SIVTVEDHEI EEFDEPPVLA KKTIFTVGPS GGQEQWAQCD LCSKWRRLPV  600
DVLLPLKWNC AENFWDSDRC LCSAPDEVGA KELENLLKSG KDLKRRRILE NHKMAPDREP  660
SGLDALASAA VLGDNAGESG DTSVGATTKH PRHRPGCTCI VCIQPPSGKG KHNPTCTCNV  720
CMTVKRRFKT LMLRKRIRQS EREAEIAQRD PVQPKENYVL TNVKGDYGHE TLQSLPVQTE  780
AEADRTGQNL VHVDQVSDNS DGQLDLNCHP DRSNECMEQE MSAAVSMTRL VHDAAHPMES  840
YLKQNGLANL TSDATVPPQT IEESEDGDAD EDEDDRVVES ESMAGPENKD DDRSGRFNQD  900
QDANQKL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-68	302	429	2	129	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	643	647	KRRRI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017086.2	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
Refseq	XP_017983611.1	0.0	PREDICTED: B3 domain-containing transcription repressor VAL1 isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A061GYW3	0.0	A0A061GYW3_THECC; High-level expression of sugar-inducible gene 2, putative isoform 1
STRING	EOY34705	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	0.0	high-level expression of sugar-inducible gene 2

Link Out ? help Back to Top
Phytozome	Kalax.0093s0091.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]