PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0093s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bZIP | ||||||||
Protein Properties | Length: 270aa MW: 29252.1 Da PI: 5.7696 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.3 | 4.6e-10 | 81 | 137 | 4 | 60 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +kr +r NR++A rs +RK +i+eLe+kv +L++e ++L +l + + l Kalax.0093s0090.1.p 81 SKRVKRILANRLSAARSKERKARYIAELEQKVRALQTEATTLSAQLTLFQRDILGLS 137 79*****************************************99988777666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.1E-14 | 78 | 142 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.381 | 80 | 143 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.1E-8 | 80 | 133 | No hit | No description |
SuperFamily | SSF57959 | 1.85E-10 | 82 | 134 | No hit | No description |
Pfam | PF00170 | 1.1E-7 | 82 | 131 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 4.42E-23 | 83 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MGVLSSSSLS SHVNNINKNN DMTGGGGCHQ DEQAGGHDLF ATYIDLDKLA MLETGGGGEL 60 VMEAKKAMPP DKLAELWTID SKRVKRILAN RLSAARSKER KARYIAELEQ KVRALQTEAT 120 TLSAQLTLFQ RDILGLSTEN NELKLQLQAM EQQAQLQHAL NEALMQEAEM LKIVTGELCC 180 PNQPDSSFNL GVPPPHAFST YHHHPPVGVH VDFVLPQQQG LSGECMQKDD PLGQLQGLVI 240 HSIVTTDKIV KSSEAPASSF SVTENSTTA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018835707.1 | 3e-72 | PREDICTED: transcription factor RF2b-like | ||||
Swissprot | Q6S4P4 | 1e-55 | RF2B_ORYSJ; Transcription factor RF2b | ||||
TrEMBL | A0A2I4FVN5 | 7e-71 | A0A2I4FVN5_JUGRE; transcription factor RF2b-like | ||||
STRING | POPTR_0019s15040.1 | 7e-68 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06850.2 | 3e-44 | basic leucine-zipper 52 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0093s0090.1.p |
Publications ? help Back to Top | |||
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