PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0093s0037.2.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 229aa    MW: 24561.6 Da    PI: 10.2523
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0093s0037.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.6e-203080155
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++a+ Aa+a++aa+++l+g
  Kalax.0093s0037.2.p 30 PKFRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSADAAARAYDAAARSLRG 80
                         79********.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-133080IPR001471AP2/ERF domain
CDDcd000183.40E-183087No hitNo description
Gene3DG3DSA:3.30.730.105.4E-313188IPR001471AP2/ERF domain
SMARTSM003801.1E-343194IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-213189IPR016177DNA-binding domain
PROSITE profilePS5103223.1173188IPR001471AP2/ERF domain
PRINTSPR003671.2E-93243IPR001471AP2/ERF domain
PRINTSPR003671.2E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGKVRGGATA AAARGNQVKD APLAIGSAEP KFRGVRKRPW GRFAAEIRDP WKKTRVWLGT  60
FDSADAAARA YDAAARSLRG PKARTNFPTP PATPPASPHH LPNDLIAAQR FYNADAYREQ  120
QRVDRANPPR PATSSMSTTV ESFSGPRRQQ TIHPAVASRR FPKSPPVTAD DCHSDCDSSS  180
NVVDGAVEVG VTTSFKKPLA FDLNFPPLDD LGFSGGESEM RCSTALCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-202488772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase. {ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:15994908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295747.13e-55ethylene-responsive transcription factor 3-like
SwissprotQ9LDE43e-41ERF83_ARATH; Ethylene-responsive transcription factor 7
TrEMBLA0A0V0HV081e-62A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like
STRINGPGSC0003DMT4000373594e-54(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-32ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Giuntoli B,Perata P
    Group VII Ethylene Response Factors in Arabidopsis: Regulation and Physiological Roles.
    Plant Physiol., 2018. 176(2): p. 1143-1155
    [PMID:29269576]