PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0092s0106.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 277aa    MW: 31338 Da    PI: 5.9419
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0092s0106.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047171193123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C k+Fs+   L  H  +H
  Kalax.0092s0106.1.p 171 YKCETCLKTFSSYQALGGHRASH 193
                          9************9999998887 PP
2zf-C2H213.60.0002216238123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp C+++F++   L  H r+H
  Kalax.0092s0106.1.p 216 HQCPVCHRVFPSGQALGGHKRSH 238
                          79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.3E-8326IPR007087Zinc finger, C2H2
SMARTSM003550.07426IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.162431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.66E-6170238No hitNo description
PROSITE profilePS5015710.325171198IPR007087Zinc finger, C2H2
SMARTSM003550.12171193IPR015880Zinc finger, C2H2-like
PfamPF139126.2E-11171195IPR007087Zinc finger, C2H2
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993216243IPR007087Zinc finger, C2H2
SMARTSM003550.012216238IPR015880Zinc finger, C2H2-like
PfamPF139127.7E-13216238IPR007087Zinc finger, C2H2
PROSITE patternPS000280218238IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MERHRCKLCW RRFGSGRALG GHMRSHVMNP SMYSDTQQPD HFDAEEEEEE EEGEEVNDGS  60
LVSHQDRESE SEASRRILTR RRSKRLRPAS ALQSGFGCRE KKLKCQVNRG SEPAWSELVE  120
QGSSVSDSSV EDVAFCLMML SRDKWNNNDP EVEEEEKHEE EEKLALAKEK YKCETCLKTF  180
SSYQALGGHR ASHNKIKLVP NPSSLADPKI PDRRIHQCPV CHRVFPSGQA LGGHKRSHAL  240
MVPEVIQQER APIRCGDVVI DLNFPAPADE DDVEAF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
179103RRRSKRLRPASALQSGFGCREKKLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-38C2H2-like zinc finger protein